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Micro-homology scoring of potential deletions

Guide: CGGCGCGCCGGAAGTGGCCA GGG

The following table lists possible deletions. Each sequence below represents the context around the guide's target, with deleted nucleotides shown as "-". They are ranked by the "micro-homology score". This score is correlated to the likelihood of finding a particular deletion, as predicted by the method of Bae et al. 2014.

Bae-Score Sequence Effect
CCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGCCAGGGCGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATTC (Wild-type sequence)
444.6 CCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGC------GGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATTC 6 bp deleted → no frameshift
329.4 CCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGC------------GACCTCGGCTCACAGCGCGCCCGGCTATTC 12 bp deleted → no frameshift
311.6 CCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGG-----GCGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATTC 5 bp deleted → frameshift
294.4 CCCCTGGCGGCCTAAGGACTCGGCG--------------------GGGGCGACCTCGGCTCACAGCGCGCCCGGCTATTC 20 bp deleted → frameshift
283.2 CCCCTGGCGGCCTAAGGACTCGGCGCGCCGG---------------GGGCGACCTCGGCTCACAGCGCGCCCGGCTATTC 15 bp deleted → no frameshift
255.2 CCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGG---------GGGCGACCTCGGCTCACAGCGCGCCCGGCTATTC 9 bp deleted → no frameshift
244.2 CCCCTGGCGGCCTAAGGACTCGGCGCG------------------GGGGCGACCTCGGCTCACAGCGCGCCCGGCTATTC 18 bp deleted → no frameshift
242.8 CCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGG----------GGCGACCTCGGCTCACAGCGCGCCCGGCTATTC 10 bp deleted → frameshift
230.8 CCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGG-----------GCGACCTCGGCTCACAGCGCGCCCGGCTATTC 11 bp deleted → frameshift
230.8 CCCCTGGCGGCCTAAGGACTCGGCGCGCCGG-----------GCGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATTC 11 bp deleted → frameshift
219.6 CCCCTGGCGGCCTAAGGACTCGGCGCGCCGG------------CGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATTC 12 bp deleted → no frameshift
218.4 CCCCTGGCGGCCTAAGGACTCGGCG--------------------------ACCTCGGCTCACAGCGCGCCCGGCTATTC 26 bp deleted → frameshift
210.0 CCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGC---------------------TCACAGCGCGCCCGGCTATTC 21 bp deleted → no frameshift
191.4 CCCCTGGCGGCCTAAGGACTCGGC-----------------------------------TCACAGCGCGCCCGGCTATTC 35 bp deleted → frameshift
190.2 CCCCTGGCGGCCTAAGGACTCGG-----------------------GGGCGACCTCGGCTCACAGCGCGCCCGGCTATTC 23 bp deleted → frameshift
188.8 CCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGCC---------------TCGGCTCACAGCGCGCCCGGCTATTC 15 bp deleted → no frameshift
180.6 CCCCTGGCGGCCTAAGGACTCGGCGCG------------------------ACCTCGGCTCACAGCGCGCCCGGCTATTC 24 bp deleted → no frameshift
179.6 CCCCTGGCGGCCTAAGGACTCGGCGCGCCGG----------------GGCGACCTCGGCTCACAGCGCGCCCGGCTATTC 16 bp deleted → frameshift
179.6 CCCCTGGCGGCCTAAGGACTCGGCGCGC----------------GGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATTC 16 bp deleted → frameshift
170.8 CCCCTGGCGGCCTAAGGACTCGGCGCGCCGG-----------------GCGACCTCGGCTCACAGCGCGCCCGGCTATTC 17 bp deleted → frameshift
170.8 CCCCTGGCGGCCTAAGGACTCGGCGCGCC------------------------------------------CGGCTATTC 42 bp deleted → no frameshift
165.0 CCCCTGGCGG------------------------------------GGGCGACCTCGGCTCACAGCGCGCCCGGCTATTC 36 bp deleted → no frameshift
162.8 CCCCTGGCGGCCTAAGGACTCGGCGCGCCGG------------------CGACCTCGGCTCACAGCGCGCCCGGCTATTC 18 bp deleted → no frameshift
155.4 CCCCTGGCGGCCTAAGGACTCGGCGCGCCGG---------------------------CTCACAGCGCGCCCGGCTATTC 27 bp deleted → no frameshift
154.8 CCCCTGGCGGCCTAAGGACTCGG-------------------GCGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATTC 19 bp deleted → frameshift
140.0 CCCCTGGCGGCCTAAGGACTCGGCGCGCCG---------------------ACCTCGGCTCACAGCGCGCCCGGCTATTC 21 bp deleted → no frameshift
133.2 CCCCTGGCGGCCTAAGGACTCGGCGCGC----------------------GACCTCGGCTCACAGCGCGCCCGGCTATTC 22 bp deleted → frameshift
121.2 CCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGCC--------------------------------CGGCTATTC 32 bp deleted → frameshift
120.4 CCCCTGGCGGCCTAAGGACTCGG------------------------GGCGACCTCGGCTCACAGCGCGCCCGGCTATTC 24 bp deleted → no frameshift
115.2 CCCCTGGCGGC---------------------------------GGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATTC 33 bp deleted → no frameshift
114.8 CCCCTGGCGGCCTAAGGACTCGGCGCGCC-------------------------TCGGCTCACAGCGCGCCCGGCTATTC 25 bp deleted → frameshift
114.8 CCCCTGGCGGCCTAAGGACTCGG-------------------------GCGACCTCGGCTCACAGCGCGCCCGGCTATTC 25 bp deleted → frameshift
114.8 CCCCTGGCGGCCTAAGG-------------------------GCGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATTC 25 bp deleted → frameshift
110.4 CCCCTGGCGGCCTAAGGACTCGGCGCGCCGGA--------------------CCTCGGCTCACAGCGCGCCCGGCTATTC 20 bp deleted → frameshift
109.2 CCCCTGGCGGCCTAAGG--------------------------CGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATTC 26 bp deleted → frameshift
108.0 CCCCTGGCGGCCTAAGGACTCGGCGCGC----------------------------------------GCCCGGCTATTC 40 bp deleted → frameshift
99.9 CCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGCCA----------------------CAGCGCGCCCGGCTATTC 22 bp deleted → frameshift
98.8 CCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGC----------------------------GCGCCCGGCTATTC 28 bp deleted → frameshift
97.6 CCCCTGGCG------------------------------------------ACCTCGGCTCACAGCGCGCCCGGCTATTC 42 bp deleted → no frameshift
94.2 CCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGC-------------------------------------TATTC 37 bp deleted → frameshift
94.0 CCCCTGGCGGCCTAAGGACTCG-----------------------------ACCTCGGCTCACAGCGCGCCCGGCTATTC 29 bp deleted → frameshift
94.0 CCCCTGGCGGCCTAAGG-----------------------------GGGCGACCTCGGCTCACAGCGCGCCCGGCTATTC 29 bp deleted → frameshift
92.8 CCCCTGGCGGCCTAAGGACTCGGCGCGCCGG-------------------------------------------CTATTC 43 bp deleted → frameshift
91.5 CCCCTGGCGGCCTAAGGAC----------------------------------CTCGGCTCACAGCGCGCCCGGCTATTC 34 bp deleted → frameshift
90.3 CCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGCCA------------------------GCGCGCCCGGCTATTC 24 bp deleted → no frameshift
89.2 CCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGC------------------------------GCCCGGCTATTC 30 bp deleted → no frameshift
89.2 CCCCTGGCGGCCTAAGGACTCGGCGCG------------------------------GCTCACAGCGCGCCCGGCTATTC 30 bp deleted → no frameshift
89.2 CCCCTGGCGGCCTAAGG------------------------------GGCGACCTCGGCTCACAGCGCGCCCGGCTATTC 30 bp deleted → no frameshift
88.8 CCCCTGGCGGCCTAAGGACTCGGCGC--------------------------------------------CCGGCTATTC 44 bp deleted → frameshift
85.2 CCCCTGGCGGC---------------------------------------GACCTCGGCTCACAGCGCGCCCGGCTATTC 39 bp deleted → no frameshift
84.8 CCCCTGGCGGCCTAAGGACTCGGCGCGC-------------------------------TCACAGCGCGCCCGGCTATTC 31 bp deleted → frameshift
84.8 CCCCTGGCGGCCTAAGG-------------------------------GCGACCTCGGCTCACAGCGCGCCCGGCTATTC 31 bp deleted → frameshift
80.8 CCCCTGGCGGCCTAAGGACTCGGCG--------------------------------GCTCACAGCGCGCCCGGCTATTC 32 bp deleted → frameshift
80.8 CCCCTGGCGGCCTAAGG--------------------------------CGACCTCGGCTCACAGCGCGCCCGGCTATTC 32 bp deleted → frameshift
80.8 CCCCTGGCGG--------------------------------GCGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATTC 32 bp deleted → frameshift
76.8 CCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGCC---------------------------------GGCTATTC 33 bp deleted → no frameshift
76.8 CCCCTGGCGGCCTAAGGACTCGGCGC---------------------------------TCACAGCGCGCCCGGCTATTC 33 bp deleted → no frameshift
72.8 CCCCTGGCGGC------------------------------------------------TCACAGCGCGCCCGGCTATTC 48 bp deleted → no frameshift
69.6 CCCCTGG-----------------------------------GCGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATTC 35 bp deleted → frameshift
67.5 CCCCTGGCGGCCTAAGGACTC----------------------------------------ACAGCGCGCCCGGCTATTC 40 bp deleted → frameshift
63.6 CCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG-------------------------------CGCGCCCGGCTATTC 31 bp deleted → frameshift
62.8 CCCCTGGCGGCCTAAGGACTCGGCGCGCCG-------------------------------------CGCCCGGCTATTC 37 bp deleted → frameshift
62.8 CCCCTGGCGG-------------------------------------GGCGACCTCGGCTCACAGCGCGCCCGGCTATTC 37 bp deleted → frameshift
62.4 CCCCTGGCGGCCTAAGGACTCGGC---------------------------------------------------TATTC 51 bp deleted → no frameshift
61.0 CCCCTGGCGGCCT------------------------------------------CGGCTCACAGCGCGCCCGGCTATTC 42 bp deleted → no frameshift
60.0 CCCCTGGCGGCCTAAGGACTCGGCGCGC--------------------------------------GCGCCCGGCTATTC 38 bp deleted → frameshift
60.0 CCCCTGGCGG--------------------------------------GCGACCTCGGCTCACAGCGCGCCCGGCTATTC 38 bp deleted → frameshift
56.8 CCCCTGGCGGCCTAAGGACTCGGCGCGCCG---------------------------------------CCCGGCTATTC 39 bp deleted → no frameshift
56.8 CCCCTGG---------------------------------------GGGCGACCTCGGCTCACAGCGCGCCCGGCTATTC 39 bp deleted → no frameshift
54.0 CCCCTGG----------------------------------------GGCGACCTCGGCTCACAGCGCGCCCGGCTATTC 40 bp deleted → frameshift
51.6 CCCCTGGCGGCCTAAGG-----------------------------------------CTCACAGCGCGCCCGGCTATTC 41 bp deleted → frameshift
51.6 CCCCTGG-----------------------------------------GCGACCTCGGCTCACAGCGCGCCCGGCTATTC 41 bp deleted → frameshift
46.8 CCCCTGGC---------------------------------------------------TCACAGCGCGCCCGGCTATTC 51 bp deleted → no frameshift
42.0 CCCCTGGCGGCCTAAGGACTCG---------------------------------------------CGCCCGGCTATTC 45 bp deleted → no frameshift
41.0 CCCCT--------------------------------------------------CGGCTCACAGCGCGCCCGGCTATTC 50 bp deleted → frameshift
40.0 CCCCTGGCGGCCTAAGGACTCGGCGCG----------------------------------------------GCTATTC 46 bp deleted → frameshift
40.0 CCCCTGGCGGCCTAAGGACTCGGC----------------------------------------------CCGGCTATTC 46 bp deleted → frameshift
38.0 CCCCTGGCGGCCTAAGGACTCGGCGCGC-----------------------------------------------TATTC 47 bp deleted → frameshift
38.0 CCCCTGGCGGCCTAAGGACTCG-----------------------------------------------CCCGGCTATTC 47 bp deleted → frameshift
36.4 CCCCTGGCGGCCTAAGGACTCGGCG------------------------------------------------GCTATTC 48 bp deleted → no frameshift
34.4 CCCCTGGCGGCCTAAGGACTCGGCGC-------------------------------------------------TATTC 49 bp deleted → frameshift
33.3 CCCCTGGCGGCCTAAGGAC--------------------------------------------AGCGCGCCCGGCTATTC 44 bp deleted → frameshift
33.0 CCCCTGGCG----------------------------------------------------------CGCCCGGCTATTC 58 bp deleted → frameshift
32.8 CCCCTGGCGGC----------------------------------------------------------------TATTC 64 bp deleted → frameshift
31.2 CCCCTGGCGGCC-----------------------------------------------------------CGGCTATTC 59 bp deleted → frameshift
31.2 CCC---------------------------------------------------TCGGCTCACAGCGCGCCCGGCTATTC 51 bp deleted → no frameshift
30.0 CCCCTGGCG------------------------------------------------------------CCCGGCTATTC 60 bp deleted → no frameshift
29.6 CC----------------------------------------------------TCGGCTCACAGCGCGCCCGGCTATTC 52 bp deleted → frameshift
28.5 CCCCTGGCGGCCT-----------------------------------------------CACAGCGCGCCCGGCTATTC 47 bp deleted → frameshift
25.8 CCCCTGGCGGCCTAAG-------------------------------------------------CGCGCCCGGCTATTC 49 bp deleted → frameshift
25.6 CCCCTGGCGGC-------------------------------------------------------GCGCCCGGCTATTC 55 bp deleted → frameshift
23.2 CCCCTGGCGGCCTAAGG---------------------------------------------------------CTATTC 57 bp deleted → no frameshift
23.2 CCCCTGGCGGC---------------------------------------------------------GCCCGGCTATTC 57 bp deleted → no frameshift
21.0 CCCCTGGC-------------------------------------------------------------------TATTC 67 bp deleted → frameshift
20.0 CCCCTGGCGGCC------------------------------------------------------------GGCTATTC 60 bp deleted → no frameshift
19.8 CCCC--------------------------------------------------------------------GGCTATTC 68 bp deleted → frameshift
19.2 CCCCT-------------------------------------------------------CACAGCGCGCCCGGCTATTC 55 bp deleted → frameshift
19.2 CCC---------------------------------------------------------------------GGCTATTC 69 bp deleted → no frameshift
18.3 CCCCTGGCGGCCTAAGGACT--------------------------------------------------------ATTC 56 bp deleted → frameshift
18.0 CCCCTGGC--------------------------------------------------------------CCGGCTATTC 62 bp deleted → frameshift
17.2 CCCCTGGCGGCCTA---------------------------------------------------------------TTC 63 bp deleted → no frameshift
15.6 CCCCTGGCGGCCTAAGGACTC----------------------------------------------------------- 59 bp deleted → frameshift
14.0 CCCC-------------------------------------------------------------------CGGCTATTC 67 bp deleted → frameshift
12.0 CC----------------------------------------------------------------------GGCTATTC 70 bp deleted → frameshift
8.7 CCCCT-----------------------------------------------------------------------ATTC 71 bp deleted → frameshift
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CRISPR/Cas9 Guide Designer for chordate vertebrate ecdysozoans lophotrochozoans protostomes spongi corals plants butterflies metazoans genomes fruitflies insects nematodes mammals.