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The following table lists possible deletions. Each sequence below represents the context around the guide's target, with deleted nucleotides shown as "-". They are ranked by the "micro-homology score". This score is correlated to the likelihood of finding a particular deletion, as predicted by the method of Bae et al. 2014.
Bae-Score | Sequence | Effect |
---|---|---|
CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGCCAGGGCGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT | (Wild-type sequence) | |
444.6 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGC------GGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT | 6 bp deleted → no frameshift |
329.4 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGC------------GACCTCGGCTCACAGCGCGCCCGGCTATT | 12 bp deleted → no frameshift |
311.6 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGG-----GCGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT | 5 bp deleted → frameshift |
294.4 | CCCCCTGGCGGCCTAAGGACTCGGCG--------------------GGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT | 20 bp deleted → frameshift |
283.2 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGG---------------GGGCGACCTCGGCTCACAGCGCGCCCGGCTATT | 15 bp deleted → no frameshift |
255.2 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGG---------GGGCGACCTCGGCTCACAGCGCGCCCGGCTATT | 9 bp deleted → no frameshift |
244.2 | CCCCCTGGCGGCCTAAGGACTCGGCGCG------------------GGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT | 18 bp deleted → no frameshift |
242.8 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGG----------GGCGACCTCGGCTCACAGCGCGCCCGGCTATT | 10 bp deleted → frameshift |
230.8 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGG-----------GCGACCTCGGCTCACAGCGCGCCCGGCTATT | 11 bp deleted → frameshift |
230.8 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGG-----------GCGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT | 11 bp deleted → frameshift |
219.6 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGG------------CGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT | 12 bp deleted → no frameshift |
218.4 | CCCCCTGGCGGCCTAAGGACTCGGCG--------------------------ACCTCGGCTCACAGCGCGCCCGGCTATT | 26 bp deleted → frameshift |
211.5 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG-------GGCGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT | 7 bp deleted → frameshift |
210.0 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGC---------------------TCACAGCGCGCCCGGCTATT | 21 bp deleted → no frameshift |
191.4 | CCCCCTGGCGGCCTAAGGACTCGGC-----------------------------------TCACAGCGCGCCCGGCTATT | 35 bp deleted → frameshift |
190.2 | CCCCCTGGCGGCCTAAGGACTCGG-----------------------GGGCGACCTCGGCTCACAGCGCGCCCGGCTATT | 23 bp deleted → frameshift |
188.8 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGCC---------------TCGGCTCACAGCGCGCCCGGCTATT | 15 bp deleted → no frameshift |
180.6 | CCCCCTGGCGGCCTAAGGACTCGGCGCG------------------------ACCTCGGCTCACAGCGCGCCCGGCTATT | 24 bp deleted → no frameshift |
179.6 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGG----------------GGCGACCTCGGCTCACAGCGCGCCCGGCTATT | 16 bp deleted → frameshift |
179.6 | CCCCCTGGCGGCCTAAGGACTCGGCGCGC----------------GGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT | 16 bp deleted → frameshift |
170.8 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGG-----------------GCGACCTCGGCTCACAGCGCGCCCGGCTATT | 17 bp deleted → frameshift |
170.8 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCC------------------------------------------CGGCTATT | 42 bp deleted → no frameshift |
165.0 | CCCCCTGGCGG------------------------------------GGGCGACCTCGGCTCACAGCGCGCCCGGCTATT | 36 bp deleted → no frameshift |
162.8 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGG------------------CGACCTCGGCTCACAGCGCGCCCGGCTATT | 18 bp deleted → no frameshift |
155.4 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGG---------------------------CTCACAGCGCGCCCGGCTATT | 27 bp deleted → no frameshift |
154.8 | CCCCCTGGCGGCCTAAGGACTCGG-------------------GCGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT | 19 bp deleted → frameshift |
143.5 | CCCCCTGGCGGCCTAAGG-------------------------GCGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT | 25 bp deleted → frameshift |
140.0 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCCG---------------------ACCTCGGCTCACAGCGCGCCCGGCTATT | 21 bp deleted → no frameshift |
133.2 | CCCCCTGGCGGCCTAAGGACTCGGCGCGC----------------------GACCTCGGCTCACAGCGCGCCCGGCTATT | 22 bp deleted → frameshift |
121.2 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGCC--------------------------------CGGCTATT | 32 bp deleted → frameshift |
120.4 | CCCCCTGGCGGCCTAAGGACTCGG------------------------GGCGACCTCGGCTCACAGCGCGCCCGGCTATT | 24 bp deleted → no frameshift |
115.2 | CCCCCTGGCGGC---------------------------------GGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT | 33 bp deleted → no frameshift |
114.8 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCC-------------------------TCGGCTCACAGCGCGCCCGGCTATT | 25 bp deleted → frameshift |
114.8 | CCCCCTGGCGGCCTAAGGACTCGG-------------------------GCGACCTCGGCTCACAGCGCGCCCGGCTATT | 25 bp deleted → frameshift |
110.4 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGA--------------------CCTCGGCTCACAGCGCGCCCGGCTATT | 20 bp deleted → frameshift |
109.2 | CCCCCTGGCGGCCTAAGG--------------------------CGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT | 26 bp deleted → frameshift |
108.0 | CCCCCTGGCGGCCTAAGGACTCGGCGCGC----------------------------------------GCCCGGCTATT | 40 bp deleted → frameshift |
98.8 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGC----------------------------GCGCCCGGCTATT | 28 bp deleted → frameshift |
97.6 | CCCCCTGGCG------------------------------------------ACCTCGGCTCACAGCGCGCCCGGCTATT | 42 bp deleted → no frameshift |
94.2 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGC-------------------------------------TATT | 37 bp deleted → frameshift |
94.0 | CCCCCTGGCGGCCTAAGGACTCG-----------------------------ACCTCGGCTCACAGCGCGCCCGGCTATT | 29 bp deleted → frameshift |
94.0 | CCCCCTGGCGGCCTAAGG-----------------------------GGGCGACCTCGGCTCACAGCGCGCCCGGCTATT | 29 bp deleted → frameshift |
92.8 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGG-------------------------------------------CTATT | 43 bp deleted → frameshift |
91.5 | CCCCCTGGCGGCCTAAGGAC----------------------------------CTCGGCTCACAGCGCGCCCGGCTATT | 34 bp deleted → frameshift |
89.2 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGC------------------------------GCCCGGCTATT | 30 bp deleted → no frameshift |
89.2 | CCCCCTGGCGGCCTAAGGACTCGGCGCG------------------------------GCTCACAGCGCGCCCGGCTATT | 30 bp deleted → no frameshift |
89.2 | CCCCCTGGCGGCCTAAGG------------------------------GGCGACCTCGGCTCACAGCGCGCCCGGCTATT | 30 bp deleted → no frameshift |
88.8 | CCCCCTGGCGGCCTAAGGACTCGGCGC--------------------------------------------CCGGCTATT | 44 bp deleted → frameshift |
85.2 | CCCCCTGGCGGC---------------------------------------GACCTCGGCTCACAGCGCGCCCGGCTATT | 39 bp deleted → no frameshift |
84.8 | CCCCCTGGCGGCCTAAGGACTCGGCGCGC-------------------------------TCACAGCGCGCCCGGCTATT | 31 bp deleted → frameshift |
84.8 | CCCCCTGGCGGCCTAAGG-------------------------------GCGACCTCGGCTCACAGCGCGCCCGGCTATT | 31 bp deleted → frameshift |
80.8 | CCCCCTGGCGGCCTAAGGACTCGGCG--------------------------------GCTCACAGCGCGCCCGGCTATT | 32 bp deleted → frameshift |
80.8 | CCCCCTGGCGGCCTAAGG--------------------------------CGACCTCGGCTCACAGCGCGCCCGGCTATT | 32 bp deleted → frameshift |
80.8 | CCCCCTGGCGG--------------------------------GCGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT | 32 bp deleted → frameshift |
76.8 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGCC---------------------------------GGCTATT | 33 bp deleted → no frameshift |
76.8 | CCCCCTGGCGGCCTAAGGACTCGGCGC---------------------------------TCACAGCGCGCCCGGCTATT | 33 bp deleted → no frameshift |
72.8 | CCCCCTGGCGGC------------------------------------------------TCACAGCGCGCCCGGCTATT | 48 bp deleted → no frameshift |
69.6 | CCCCCTGG-----------------------------------GCGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT | 35 bp deleted → frameshift |
67.5 | CCCCCTGGCGGCCTAAGGACTC----------------------------------------ACAGCGCGCCCGGCTATT | 40 bp deleted → frameshift |
63.6 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG-------------------------------CGCGCCCGGCTATT | 31 bp deleted → frameshift |
62.8 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCCG-------------------------------------CGCCCGGCTATT | 37 bp deleted → frameshift |
62.8 | CCCCCTGGCGG-------------------------------------GGCGACCTCGGCTCACAGCGCGCCCGGCTATT | 37 bp deleted → frameshift |
62.4 | CCCCCTGGCGGCCTAAGGACTCGGC---------------------------------------------------TATT | 51 bp deleted → no frameshift |
61.0 | CCCCCTGGCGGCCT------------------------------------------CGGCTCACAGCGCGCCCGGCTATT | 42 bp deleted → no frameshift |
60.0 | CCCCCTGGCGGCCTAAGGACTCGGCGCGC--------------------------------------GCGCCCGGCTATT | 38 bp deleted → frameshift |
60.0 | CCCCCTGGCGG--------------------------------------GCGACCTCGGCTCACAGCGCGCCCGGCTATT | 38 bp deleted → frameshift |
56.8 | CCCCCTGGCGGCCTAAGGACTCGGCGCGCCG---------------------------------------CCCGGCTATT | 39 bp deleted → no frameshift |
56.8 | CCCCCTGG---------------------------------------GGGCGACCTCGGCTCACAGCGCGCCCGGCTATT | 39 bp deleted → no frameshift |
54.0 | CCCCCTGG----------------------------------------GGCGACCTCGGCTCACAGCGCGCCCGGCTATT | 40 bp deleted → frameshift |
51.6 | CCCCCTGGCGGCCTAAGG-----------------------------------------CTCACAGCGCGCCCGGCTATT | 41 bp deleted → frameshift |
51.6 | CCCCCTGG-----------------------------------------GCGACCTCGGCTCACAGCGCGCCCGGCTATT | 41 bp deleted → frameshift |
46.8 | CCCCCTGGC---------------------------------------------------TCACAGCGCGCCCGGCTATT | 51 bp deleted → no frameshift |
42.0 | CCCCCTGGCGGCCTAAGGACTCG---------------------------------------------CGCCCGGCTATT | 45 bp deleted → no frameshift |
41.0 | CCCCCT--------------------------------------------------CGGCTCACAGCGCGCCCGGCTATT | 50 bp deleted → frameshift |
40.0 | CCCCCTGGCGGCCTAAGGACTCGGCGCG----------------------------------------------GCTATT | 46 bp deleted → frameshift |
40.0 | CCCCCTGGCGGCCTAAGGACTCGGC----------------------------------------------CCGGCTATT | 46 bp deleted → frameshift |
38.0 | CCCCCTGGCGGCCTAAGGACTCGGCGCGC-----------------------------------------------TATT | 47 bp deleted → frameshift |
38.0 | CCCCCTGGCGGCCTAAGGACTCG-----------------------------------------------CCCGGCTATT | 47 bp deleted → frameshift |
36.4 | CCCCCTGGCGGCCTAAGGACTCGGCG------------------------------------------------GCTATT | 48 bp deleted → no frameshift |
34.4 | CCCCCTGGCGGCCTAAGGACTCGGCGC-------------------------------------------------TATT | 49 bp deleted → frameshift |
33.3 | CCCCCTGGCGGCCTAAGGAC--------------------------------------------AGCGCGCCCGGCTATT | 44 bp deleted → frameshift |
33.0 | CCCCCTGGCG----------------------------------------------------------CGCCCGGCTATT | 58 bp deleted → frameshift |
32.8 | CCCCCTGGCGGC----------------------------------------------------------------TATT | 64 bp deleted → frameshift |
31.2 | CCCCCTGGCGGCC-----------------------------------------------------------CGGCTATT | 59 bp deleted → frameshift |
31.2 | CCCC---------------------------------------------------TCGGCTCACAGCGCGCCCGGCTATT | 51 bp deleted → no frameshift |
30.0 | CCCCCTGGCG------------------------------------------------------------CCCGGCTATT | 60 bp deleted → no frameshift |
29.6 | CCC----------------------------------------------------TCGGCTCACAGCGCGCCCGGCTATT | 52 bp deleted → frameshift |
28.5 | CCCCCTGGCGGCCT-----------------------------------------------CACAGCGCGCCCGGCTATT | 47 bp deleted → frameshift |
28.4 | CC-----------------------------------------------------TCGGCTCACAGCGCGCCCGGCTATT | 53 bp deleted → frameshift |
25.8 | CCCCCTGGCGGCCTAAG-------------------------------------------------CGCGCCCGGCTATT | 49 bp deleted → frameshift |
25.6 | CCCCCTGGCGGC-------------------------------------------------------GCGCCCGGCTATT | 55 bp deleted → frameshift |
23.2 | CCCCCTGGCGGCCTAAGG---------------------------------------------------------CTATT | 57 bp deleted → no frameshift |
23.2 | CCCCCTGGCGGC---------------------------------------------------------GCCCGGCTATT | 57 bp deleted → no frameshift |
21.0 | CCCCCTGGC-------------------------------------------------------------------TATT | 67 bp deleted → frameshift |
20.0 | CCCCCTGGCGGCC------------------------------------------------------------GGCTATT | 60 bp deleted → no frameshift |
19.8 | CCCCC--------------------------------------------------------------------GGCTATT | 68 bp deleted → frameshift |
19.2 | CCCCCT-------------------------------------------------------CACAGCGCGCCCGGCTATT | 55 bp deleted → frameshift |
19.2 | CCCC---------------------------------------------------------------------GGCTATT | 69 bp deleted → no frameshift |
18.3 | CCCCCTGGCGGCCTAAGGACT--------------------------------------------------------ATT | 56 bp deleted → frameshift |
18.0 | CCCCCTGGC--------------------------------------------------------------CCGGCTATT | 62 bp deleted → frameshift |
18.0 | CCC----------------------------------------------------------------------GGCTATT | 70 bp deleted → frameshift |
17.2 | CCCCCTGGCGGCCTA---------------------------------------------------------------TT | 63 bp deleted → no frameshift |
14.0 | CCCCC-------------------------------------------------------------------CGGCTATT | 67 bp deleted → frameshift |
11.6 | CC-----------------------------------------------------------------------GGCTATT | 71 bp deleted → frameshift |
8.7 | CCCCCT-----------------------------------------------------------------------ATT | 71 bp deleted → frameshift |