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Micro-homology scoring of potential deletions

Guide: TCGGCGCGCCGGAAGTGGCC AGG

The following table lists possible deletions. Each sequence below represents the context around the guide's target, with deleted nucleotides shown as "-". They are ranked by the "micro-homology score". This score is correlated to the likelihood of finding a particular deletion, as predicted by the method of Bae et al. 2014.

Bae-Score Sequence Effect
CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGCCAGGGCGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT (Wild-type sequence)
444.6 CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGC------GGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT 6 bp deleted → no frameshift
329.4 CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGC------------GACCTCGGCTCACAGCGCGCCCGGCTATT 12 bp deleted → no frameshift
311.6 CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGG-----GCGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT 5 bp deleted → frameshift
294.4 CCCCCTGGCGGCCTAAGGACTCGGCG--------------------GGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT 20 bp deleted → frameshift
283.2 CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGG---------------GGGCGACCTCGGCTCACAGCGCGCCCGGCTATT 15 bp deleted → no frameshift
255.2 CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGG---------GGGCGACCTCGGCTCACAGCGCGCCCGGCTATT 9 bp deleted → no frameshift
244.2 CCCCCTGGCGGCCTAAGGACTCGGCGCG------------------GGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT 18 bp deleted → no frameshift
242.8 CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGG----------GGCGACCTCGGCTCACAGCGCGCCCGGCTATT 10 bp deleted → frameshift
230.8 CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGG-----------GCGACCTCGGCTCACAGCGCGCCCGGCTATT 11 bp deleted → frameshift
230.8 CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGG-----------GCGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT 11 bp deleted → frameshift
219.6 CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGG------------CGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT 12 bp deleted → no frameshift
218.4 CCCCCTGGCGGCCTAAGGACTCGGCG--------------------------ACCTCGGCTCACAGCGCGCCCGGCTATT 26 bp deleted → frameshift
211.5 CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG-------GGCGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT 7 bp deleted → frameshift
210.0 CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGC---------------------TCACAGCGCGCCCGGCTATT 21 bp deleted → no frameshift
191.4 CCCCCTGGCGGCCTAAGGACTCGGC-----------------------------------TCACAGCGCGCCCGGCTATT 35 bp deleted → frameshift
190.2 CCCCCTGGCGGCCTAAGGACTCGG-----------------------GGGCGACCTCGGCTCACAGCGCGCCCGGCTATT 23 bp deleted → frameshift
188.8 CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGCC---------------TCGGCTCACAGCGCGCCCGGCTATT 15 bp deleted → no frameshift
180.6 CCCCCTGGCGGCCTAAGGACTCGGCGCG------------------------ACCTCGGCTCACAGCGCGCCCGGCTATT 24 bp deleted → no frameshift
179.6 CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGG----------------GGCGACCTCGGCTCACAGCGCGCCCGGCTATT 16 bp deleted → frameshift
179.6 CCCCCTGGCGGCCTAAGGACTCGGCGCGC----------------GGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT 16 bp deleted → frameshift
170.8 CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGG-----------------GCGACCTCGGCTCACAGCGCGCCCGGCTATT 17 bp deleted → frameshift
170.8 CCCCCTGGCGGCCTAAGGACTCGGCGCGCC------------------------------------------CGGCTATT 42 bp deleted → no frameshift
165.0 CCCCCTGGCGG------------------------------------GGGCGACCTCGGCTCACAGCGCGCCCGGCTATT 36 bp deleted → no frameshift
162.8 CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGG------------------CGACCTCGGCTCACAGCGCGCCCGGCTATT 18 bp deleted → no frameshift
155.4 CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGG---------------------------CTCACAGCGCGCCCGGCTATT 27 bp deleted → no frameshift
154.8 CCCCCTGGCGGCCTAAGGACTCGG-------------------GCGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT 19 bp deleted → frameshift
143.5 CCCCCTGGCGGCCTAAGG-------------------------GCGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT 25 bp deleted → frameshift
140.0 CCCCCTGGCGGCCTAAGGACTCGGCGCGCCG---------------------ACCTCGGCTCACAGCGCGCCCGGCTATT 21 bp deleted → no frameshift
133.2 CCCCCTGGCGGCCTAAGGACTCGGCGCGC----------------------GACCTCGGCTCACAGCGCGCCCGGCTATT 22 bp deleted → frameshift
121.2 CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGCC--------------------------------CGGCTATT 32 bp deleted → frameshift
120.4 CCCCCTGGCGGCCTAAGGACTCGG------------------------GGCGACCTCGGCTCACAGCGCGCCCGGCTATT 24 bp deleted → no frameshift
115.2 CCCCCTGGCGGC---------------------------------GGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT 33 bp deleted → no frameshift
114.8 CCCCCTGGCGGCCTAAGGACTCGGCGCGCC-------------------------TCGGCTCACAGCGCGCCCGGCTATT 25 bp deleted → frameshift
114.8 CCCCCTGGCGGCCTAAGGACTCGG-------------------------GCGACCTCGGCTCACAGCGCGCCCGGCTATT 25 bp deleted → frameshift
110.4 CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGA--------------------CCTCGGCTCACAGCGCGCCCGGCTATT 20 bp deleted → frameshift
109.2 CCCCCTGGCGGCCTAAGG--------------------------CGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT 26 bp deleted → frameshift
108.0 CCCCCTGGCGGCCTAAGGACTCGGCGCGC----------------------------------------GCCCGGCTATT 40 bp deleted → frameshift
98.8 CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGC----------------------------GCGCCCGGCTATT 28 bp deleted → frameshift
97.6 CCCCCTGGCG------------------------------------------ACCTCGGCTCACAGCGCGCCCGGCTATT 42 bp deleted → no frameshift
94.2 CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGC-------------------------------------TATT 37 bp deleted → frameshift
94.0 CCCCCTGGCGGCCTAAGGACTCG-----------------------------ACCTCGGCTCACAGCGCGCCCGGCTATT 29 bp deleted → frameshift
94.0 CCCCCTGGCGGCCTAAGG-----------------------------GGGCGACCTCGGCTCACAGCGCGCCCGGCTATT 29 bp deleted → frameshift
92.8 CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGG-------------------------------------------CTATT 43 bp deleted → frameshift
91.5 CCCCCTGGCGGCCTAAGGAC----------------------------------CTCGGCTCACAGCGCGCCCGGCTATT 34 bp deleted → frameshift
89.2 CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGC------------------------------GCCCGGCTATT 30 bp deleted → no frameshift
89.2 CCCCCTGGCGGCCTAAGGACTCGGCGCG------------------------------GCTCACAGCGCGCCCGGCTATT 30 bp deleted → no frameshift
89.2 CCCCCTGGCGGCCTAAGG------------------------------GGCGACCTCGGCTCACAGCGCGCCCGGCTATT 30 bp deleted → no frameshift
88.8 CCCCCTGGCGGCCTAAGGACTCGGCGC--------------------------------------------CCGGCTATT 44 bp deleted → frameshift
85.2 CCCCCTGGCGGC---------------------------------------GACCTCGGCTCACAGCGCGCCCGGCTATT 39 bp deleted → no frameshift
84.8 CCCCCTGGCGGCCTAAGGACTCGGCGCGC-------------------------------TCACAGCGCGCCCGGCTATT 31 bp deleted → frameshift
84.8 CCCCCTGGCGGCCTAAGG-------------------------------GCGACCTCGGCTCACAGCGCGCCCGGCTATT 31 bp deleted → frameshift
80.8 CCCCCTGGCGGCCTAAGGACTCGGCG--------------------------------GCTCACAGCGCGCCCGGCTATT 32 bp deleted → frameshift
80.8 CCCCCTGGCGGCCTAAGG--------------------------------CGACCTCGGCTCACAGCGCGCCCGGCTATT 32 bp deleted → frameshift
80.8 CCCCCTGGCGG--------------------------------GCGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT 32 bp deleted → frameshift
76.8 CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAGTGGCC---------------------------------GGCTATT 33 bp deleted → no frameshift
76.8 CCCCCTGGCGGCCTAAGGACTCGGCGC---------------------------------TCACAGCGCGCCCGGCTATT 33 bp deleted → no frameshift
72.8 CCCCCTGGCGGC------------------------------------------------TCACAGCGCGCCCGGCTATT 48 bp deleted → no frameshift
69.6 CCCCCTGG-----------------------------------GCGGGGGCGACCTCGGCTCACAGCGCGCCCGGCTATT 35 bp deleted → frameshift
67.5 CCCCCTGGCGGCCTAAGGACTC----------------------------------------ACAGCGCGCCCGGCTATT 40 bp deleted → frameshift
63.6 CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG-------------------------------CGCGCCCGGCTATT 31 bp deleted → frameshift
62.8 CCCCCTGGCGGCCTAAGGACTCGGCGCGCCG-------------------------------------CGCCCGGCTATT 37 bp deleted → frameshift
62.8 CCCCCTGGCGG-------------------------------------GGCGACCTCGGCTCACAGCGCGCCCGGCTATT 37 bp deleted → frameshift
62.4 CCCCCTGGCGGCCTAAGGACTCGGC---------------------------------------------------TATT 51 bp deleted → no frameshift
61.0 CCCCCTGGCGGCCT------------------------------------------CGGCTCACAGCGCGCCCGGCTATT 42 bp deleted → no frameshift
60.0 CCCCCTGGCGGCCTAAGGACTCGGCGCGC--------------------------------------GCGCCCGGCTATT 38 bp deleted → frameshift
60.0 CCCCCTGGCGG--------------------------------------GCGACCTCGGCTCACAGCGCGCCCGGCTATT 38 bp deleted → frameshift
56.8 CCCCCTGGCGGCCTAAGGACTCGGCGCGCCG---------------------------------------CCCGGCTATT 39 bp deleted → no frameshift
56.8 CCCCCTGG---------------------------------------GGGCGACCTCGGCTCACAGCGCGCCCGGCTATT 39 bp deleted → no frameshift
54.0 CCCCCTGG----------------------------------------GGCGACCTCGGCTCACAGCGCGCCCGGCTATT 40 bp deleted → frameshift
51.6 CCCCCTGGCGGCCTAAGG-----------------------------------------CTCACAGCGCGCCCGGCTATT 41 bp deleted → frameshift
51.6 CCCCCTGG-----------------------------------------GCGACCTCGGCTCACAGCGCGCCCGGCTATT 41 bp deleted → frameshift
46.8 CCCCCTGGC---------------------------------------------------TCACAGCGCGCCCGGCTATT 51 bp deleted → no frameshift
42.0 CCCCCTGGCGGCCTAAGGACTCG---------------------------------------------CGCCCGGCTATT 45 bp deleted → no frameshift
41.0 CCCCCT--------------------------------------------------CGGCTCACAGCGCGCCCGGCTATT 50 bp deleted → frameshift
40.0 CCCCCTGGCGGCCTAAGGACTCGGCGCG----------------------------------------------GCTATT 46 bp deleted → frameshift
40.0 CCCCCTGGCGGCCTAAGGACTCGGC----------------------------------------------CCGGCTATT 46 bp deleted → frameshift
38.0 CCCCCTGGCGGCCTAAGGACTCGGCGCGC-----------------------------------------------TATT 47 bp deleted → frameshift
38.0 CCCCCTGGCGGCCTAAGGACTCG-----------------------------------------------CCCGGCTATT 47 bp deleted → frameshift
36.4 CCCCCTGGCGGCCTAAGGACTCGGCG------------------------------------------------GCTATT 48 bp deleted → no frameshift
34.4 CCCCCTGGCGGCCTAAGGACTCGGCGC-------------------------------------------------TATT 49 bp deleted → frameshift
33.3 CCCCCTGGCGGCCTAAGGAC--------------------------------------------AGCGCGCCCGGCTATT 44 bp deleted → frameshift
33.0 CCCCCTGGCG----------------------------------------------------------CGCCCGGCTATT 58 bp deleted → frameshift
32.8 CCCCCTGGCGGC----------------------------------------------------------------TATT 64 bp deleted → frameshift
31.2 CCCCCTGGCGGCC-----------------------------------------------------------CGGCTATT 59 bp deleted → frameshift
31.2 CCCC---------------------------------------------------TCGGCTCACAGCGCGCCCGGCTATT 51 bp deleted → no frameshift
30.0 CCCCCTGGCG------------------------------------------------------------CCCGGCTATT 60 bp deleted → no frameshift
29.6 CCC----------------------------------------------------TCGGCTCACAGCGCGCCCGGCTATT 52 bp deleted → frameshift
28.5 CCCCCTGGCGGCCT-----------------------------------------------CACAGCGCGCCCGGCTATT 47 bp deleted → frameshift
28.4 CC-----------------------------------------------------TCGGCTCACAGCGCGCCCGGCTATT 53 bp deleted → frameshift
25.8 CCCCCTGGCGGCCTAAG-------------------------------------------------CGCGCCCGGCTATT 49 bp deleted → frameshift
25.6 CCCCCTGGCGGC-------------------------------------------------------GCGCCCGGCTATT 55 bp deleted → frameshift
23.2 CCCCCTGGCGGCCTAAGG---------------------------------------------------------CTATT 57 bp deleted → no frameshift
23.2 CCCCCTGGCGGC---------------------------------------------------------GCCCGGCTATT 57 bp deleted → no frameshift
21.0 CCCCCTGGC-------------------------------------------------------------------TATT 67 bp deleted → frameshift
20.0 CCCCCTGGCGGCC------------------------------------------------------------GGCTATT 60 bp deleted → no frameshift
19.8 CCCCC--------------------------------------------------------------------GGCTATT 68 bp deleted → frameshift
19.2 CCCCCT-------------------------------------------------------CACAGCGCGCCCGGCTATT 55 bp deleted → frameshift
19.2 CCCC---------------------------------------------------------------------GGCTATT 69 bp deleted → no frameshift
18.3 CCCCCTGGCGGCCTAAGGACT--------------------------------------------------------ATT 56 bp deleted → frameshift
18.0 CCCCCTGGC--------------------------------------------------------------CCGGCTATT 62 bp deleted → frameshift
18.0 CCC----------------------------------------------------------------------GGCTATT 70 bp deleted → frameshift
17.2 CCCCCTGGCGGCCTA---------------------------------------------------------------TT 63 bp deleted → no frameshift
14.0 CCCCC-------------------------------------------------------------------CGGCTATT 67 bp deleted → frameshift
11.6 CC-----------------------------------------------------------------------GGCTATT 71 bp deleted → frameshift
8.7 CCCCCT-----------------------------------------------------------------------ATT 71 bp deleted → frameshift
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CRISPR/Cas9 Guide Designer for chordate vertebrate ecdysozoans lophotrochozoans protostomes spongi corals plants butterflies metazoans genomes fruitflies insects nematodes mammals.