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The following table lists possible deletions. Each sequence below represents the context around the guide's target, with deleted nucleotides shown as "-". They are ranked by the "micro-homology score". This score is correlated to the likelihood of finding a particular deletion, as predicted by the method of Bae et al. 2014.
Bae-Score | Sequence | Effect |
---|---|---|
GTCGCCCCCGCCCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGGGGCGCCGGCGCGCGCCCAGATTGGGGAC | (Wild-type sequence) | |
417.6 | GTCGCCCCCGCCCTGGCCACTTCCGGCGCGCCG-------------CCAGGGGGCGCCGGCGCGCGCCCAGATTGGGGAC | 13 bp deleted → frameshift |
359.2 | GTCGCCCCCGCCCTGGCCACTTCCGGCGCGCC----------------AGGGGGCGCCGGCGCGCGCCCAGATTGGGGAC | 16 bp deleted → frameshift |
329.4 | GTCGCCCCCGCCCTGGCCACTTCCGGCGCGC----------------------------------GCCCAGATTGGGGAC | 34 bp deleted → frameshift |
327.6 | GTCGCCCCCGCCCTGGCCACTTCCGGCGCGCCG--------------------------GCGCGCGCCCAGATTGGGGAC | 26 bp deleted → frameshift |
282.0 | GTCGCCCCCGCCCTGGCCACTTCCGGCGCGCCGAGTCC-------GCCAGGGGGCGCCGGCGCGCGCCCAGATTGGGGAC | 7 bp deleted → frameshift |
256.2 | GTCGCCCCCGCCCTGGCCACTTCCGGC-----------------CGCCAGGGGGCGCCGGCGCGCGCCCAGATTGGGGAC | 17 bp deleted → frameshift |
247.0 | GTCGCCCCCGCCCTGGCCACTTCCGGCGC----------------------------CGGCGCGCGCCCAGATTGGGGAC | 28 bp deleted → frameshift |
244.2 | GTCGCCCCCGCCCTGGCCACTTCCGGCGC------------------CAGGGGGCGCCGGCGCGCGCCCAGATTGGGGAC | 18 bp deleted → no frameshift |
242.8 | GTCGCCCCCGCCCTGGCCACTTCCGGCGCGCCGAGTCC----------AGGGGGCGCCGGCGCGCGCCCAGATTGGGGAC | 10 bp deleted → frameshift |
231.0 | GTCGCCCCCGCCCTGGCCACTTCCGGCGCGCC------------------------------------CAGATTGGGGAC | 36 bp deleted → no frameshift |
211.5 | GTCGCCCCCGCCCTGGCCACTTCCGGCGCGCCGAG-------GCCGCCAGGGGGCGCCGGCGCGCGCCCAGATTGGGGAC | 7 bp deleted → frameshift |
210.0 | GTCGCCCCCGCCCTGGCCACTTCCG---------------------CCAGGGGGCGCCGGCGCGCGCCCAGATTGGGGAC | 21 bp deleted → no frameshift |
207.2 | GTCGCCCCCGCCCTGGCC---------------------------GCCAGGGGGCGCCGGCGCGCGCCCAGATTGGGGAC | 27 bp deleted → no frameshift |
188.8 | GTCGCCCCCGCCCTGGCCACTTCCGGCGC---------------CGCCAGGGGGCGCCGGCGCGCGCCCAGATTGGGGAC | 15 bp deleted → no frameshift |
165.0 | GTCGCCCCCGCC------------------------------------AGGGGGCGCCGGCGCGCGCCCAGATTGGGGAC | 36 bp deleted → no frameshift |
161.6 | GTCGCCCCCGCCCTGGCCACTTCCGGCGCGC--------------------------------GCGCCCAGATTGGGGAC | 32 bp deleted → frameshift |
156.1 | GTCGCCCCCGCCCTGGCCA------------------------------GGGGGCGCCGGCGCGCGCCCAGATTGGGGAC | 30 bp deleted → no frameshift |
147.2 | GTCGCCCCCGCCCTGGCCACTTCCGGCGCGCCGAGTCC--------------------GGCGCGCGCCCAGATTGGGGAC | 20 bp deleted → frameshift |
147.2 | GTCGCCCCCGCCCTGGCCACTTCCGGC--------------------CAGGGGGCGCCGGCGCGCGCCCAGATTGGGGAC | 20 bp deleted → frameshift |
141.6 | GTCGCCCCCGCCCTGGCCACTTCCGGCGCGCCGAG---------------GGGGCGCCGGCGCGCGCCCAGATTGGGGAC | 15 bp deleted → no frameshift |
126.8 | GTCGCCCCCGCCCTGGCCACTTCCGGCGCGCCG-----------------------CCGGCGCGCGCCCAGATTGGGGAC | 23 bp deleted → frameshift |
120.4 | GTCGCCCCCGCCCTGGCCACTTCCGGCGCGC------------------------GCCGGCGCGCGCCCAGATTGGGGAC | 24 bp deleted → no frameshift |
120.4 | GTCGCCCCCGCCCTGGCCACTTCC------------------------AGGGGGCGCCGGCGCGCGCCCAGATTGGGGAC | 24 bp deleted → no frameshift |
120.0 | GTCGCCCCCGCCCTGGCCACTTCCGGCGC--------------------------------------CCAGATTGGGGAC | 38 bp deleted → frameshift |
115.2 | GTCGCCCCCGCC---------------------------------GCCAGGGGGCGCCGGCGCGCGCCCAGATTGGGGAC | 33 bp deleted → no frameshift |
114.8 | GTCGCCCCCGCCCTGGCCACTTCCGG-------------------------GGGCGCCGGCGCGCGCCCAGATTGGGGAC | 25 bp deleted → frameshift |
109.2 | GTCGCCCCCGCCCTGGCCACTTCCGG--------------------------GGCGCCGGCGCGCGCCCAGATTGGGGAC | 26 bp deleted → frameshift |
103.6 | GTCGCCCCCGCCCTGGCCACTTCCGG---------------------------GCGCCGGCGCGCGCCCAGATTGGGGAC | 27 bp deleted → no frameshift |
97.6 | GTCGCC------------------------------------------AGGGGGCGCCGGCGCGCGCCCAGATTGGGGAC | 42 bp deleted → no frameshift |
94.0 | GTCGCCCCCGCCCTGGCCACTTCCGGCGCGCCG-----------------------------CGCGCCCAGATTGGGGAC | 29 bp deleted → frameshift |
94.0 | GTCGCCCCCGCCCTGGCCACTTCCGGCGCG-----------------------------GCGCGCGCCCAGATTGGGGAC | 29 bp deleted → frameshift |
90.0 | GTCGCCCCCGCCCTGGC--------------------------------------GCCGGCGCGCGCCCAGATTGGGGAC | 38 bp deleted → frameshift |
89.2 | GTCGCCCCCGCCCTGGCCACTTCCGGCGCGCCGAGTCC------------------------------CAGATTGGGGAC | 30 bp deleted → no frameshift |
89.2 | GTCGCCCCCGCCCTGGCCACTTCCGGCGCGC------------------------------GCGCGCCCAGATTGGGGAC | 30 bp deleted → no frameshift |
89.2 | GTCGCCCCCGCCCTGGCCACTTCCGGC------------------------------CGGCGCGCGCCCAGATTGGGGAC | 30 bp deleted → no frameshift |
85.2 | GTCGCC---------------------------------------GCCAGGGGGCGCCGGCGCGCGCCCAGATTGGGGAC | 39 bp deleted → no frameshift |
84.8 | GTCGCCCCCGCCCTGGCCACTTCCGGCGCGCCGAGTCC-------------------------------AGATTGGGGAC | 31 bp deleted → frameshift |
84.8 | GTCGCCCCCGCCCTGGCCACTTCCGGCGCGCCG-------------------------------CGCCCAGATTGGGGAC | 31 bp deleted → frameshift |
84.8 | GTCGCCCCCGCCCTGGCCACTTCCGGCG-------------------------------GCGCGCGCCCAGATTGGGGAC | 31 bp deleted → frameshift |
84.8 | GTCGCCCCCGCCCTGGCCACTTCCG-------------------------------CCGGCGCGCGCCCAGATTGGGGAC | 31 bp deleted → frameshift |
81.0 | GTCGCCCCCGCCCTGGCC----------------------------------------GGCGCGCGCCCAGATTGGGGAC | 40 bp deleted → frameshift |
80.8 | GTCGCCCCCGCCC--------------------------------GCCAGGGGGCGCCGGCGCGCGCCCAGATTGGGGAC | 32 bp deleted → frameshift |
80.0 | GTCGCCCCCGCC----------------------------------------------GGCGCGCGCCCAGATTGGGGAC | 46 bp deleted → frameshift |
76.8 | GTCGCCCCCGCCCTGGCCACTTCCGGCGCGCCG---------------------------------CCCAGATTGGGGAC | 33 bp deleted → no frameshift |
69.6 | GTCGCCCCCGCCCTGG-----------------------------------GGGCGCCGGCGCGCGCCCAGATTGGGGAC | 35 bp deleted → frameshift |
69.6 | GTCGCCCCCGCCC-----------------------------------AGGGGGCGCCGGCGCGCGCCCAGATTGGGGAC | 35 bp deleted → frameshift |
66.6 | GTCGCCCCCGCCCTGGC--------------------------------------------GCGCGCCCAGATTGGGGAC | 44 bp deleted → frameshift |
66.0 | GTCGCCCCCGCCCTGG------------------------------------GGCGCCGGCGCGCGCCCAGATTGGGGAC | 36 bp deleted → no frameshift |
62.8 | GTCGCCCCCGCCCTGGCCACTTCCGGCGCGCC-------------------------------------AGATTGGGGAC | 37 bp deleted → frameshift |
62.8 | GTCGCCCCCGCCCTGGCCACTTCCG-------------------------------------CGCGCCCAGATTGGGGAC | 37 bp deleted → frameshift |
62.8 | GTCGCCCCCGCCCTGG-------------------------------------GCGCCGGCGCGCGCCCAGATTGGGGAC | 37 bp deleted → frameshift |
62.8 | GTCGCCCC-------------------------------------GCCAGGGGGCGCCGGCGCGCGCCCAGATTGGGGAC | 37 bp deleted → frameshift |
61.0 | GTCGCCCCCGCCC--------------------------------------------------------AGATTGGGGAC | 56 bp deleted → frameshift |
60.0 | GTCGCCC--------------------------------------GCCAGGGGGCGCCGGCGCGCGCCCAGATTGGGGAC | 38 bp deleted → frameshift |
59.2 | GTCGCC----------------------------------------------------GGCGCGCGCCCAGATTGGGGAC | 52 bp deleted → frameshift |
56.8 | GTCGCCCCCGCCCTGGCCACTTCCG---------------------------------------CGCCCAGATTGGGGAC | 39 bp deleted → no frameshift |
56.8 | GTCGCCCCC---------------------------------------AGGGGGCGCCGGCGCGCGCCCAGATTGGGGAC | 39 bp deleted → no frameshift |
54.0 | GTCGCCCCCGCCCTGGCCACTTCCGGC----------------------------------------CCAGATTGGGGAC | 40 bp deleted → frameshift |
54.0 | GTCGCCCC----------------------------------------AGGGGGCGCCGGCGCGCGCCCAGATTGGGGAC | 40 bp deleted → frameshift |
51.6 | GTCGCCCCCGCCCTGGCCACTTCCG-----------------------------------------CCCAGATTGGGGAC | 41 bp deleted → frameshift |
51.6 | GTCGCCC-----------------------------------------AGGGGGCGCCGGCGCGCGCCCAGATTGGGGAC | 41 bp deleted → frameshift |
51.6 | GTCGCCCCCG-------------------------------------------------GCGCGCGCCCAGATTGGGGAC | 49 bp deleted → frameshift |
49.5 | GTCGCCCCCGCCCTGGCCACTTCCGGCGCGCCGAG------------------------------------ATTGGGGAC | 36 bp deleted → no frameshift |
49.2 | GTCGCCCCCGCCCTGGCC--------------------------------------------------CAGATTGGGGAC | 50 bp deleted → frameshift |
45.0 | GTCGCCCCCGCCCTGGCCACTTCCGGCGCGCCGA--------------------------------------TTGGGGAC | 38 bp deleted → frameshift |
45.0 | GTCGCCC--------------------------------------------------------------AGATTGGGGAC | 62 bp deleted → frameshift |
44.4 | GTCGCCCCCGCCCTGGCCACTTCC--------------------------------------------CAGATTGGGGAC | 44 bp deleted → frameshift |
44.4 | GTCGCCCCCGC--------------------------------------------GCCGGCGCGCGCCCAGATTGGGGAC | 44 bp deleted → frameshift |
44.4 | GTCGCCCCCGC----------------------------------------------------GCGCCCAGATTGGGGAC | 52 bp deleted → frameshift |
42.0 | GTCGCCCCCGCCCTGGCCACTTCC---------------------------------------------AGATTGGGGAC | 45 bp deleted → no frameshift |
42.0 | GTCGCCCCCGCCC---------------------------------------------GGCGCGCGCCCAGATTGGGGAC | 45 bp deleted → no frameshift |
40.2 | GTCGCCCCCGC------------------------------------------------------GCCCAGATTGGGGAC | 54 bp deleted → no frameshift |
40.0 | GTCGCCCCCGCCCTGGC----------------------------------------------GCGCCCAGATTGGGGAC | 46 bp deleted → frameshift |
39.0 | GTCGCCCCCGCCCTGGCCA---------------------------------------------------GATTGGGGAC | 51 bp deleted → no frameshift |
36.6 | GTCGCCCCCGCCCTGGCCACTTCCGGCGCGCCGAGTCCTT----------------------------------GGGGAC | 34 bp deleted → frameshift |
36.4 | GTCGCCCCCGCCCTGGC------------------------------------------------GCCCAGATTGGGGAC | 48 bp deleted → no frameshift |
33.0 | GTCGC----------------------------------------------------------GCGCCCAGATTGGGGAC | 58 bp deleted → frameshift |
32.8 | GTCGCCCCCGCCCTGGCCACTTCCGG--------------------------------------------------GGAC | 50 bp deleted → frameshift |
32.8 | GTCGCCCCCGC--------------------------------------------------GCGCGCCCAGATTGGGGAC | 50 bp deleted → frameshift |
32.8 | GTCGCCCC--------------------------------------------------GGCGCGCGCCCAGATTGGGGAC | 50 bp deleted → frameshift |
32.8 | GTCGC--------------------------------------------------GCCGGCGCGCGCCCAGATTGGGGAC | 50 bp deleted → frameshift |
31.5 | GTCGCCCCCGCCCTGGCCACTTCCGGCGCGCCGA---------------------------------------------C | 45 bp deleted → no frameshift |
31.2 | GTCGCCCCCGCCCTGGCCACTTCCGG---------------------------------------------------GAC | 51 bp deleted → no frameshift |
31.2 | GTCGCCC---------------------------------------------------GGCGCGCGCCCAGATTGGGGAC | 51 bp deleted → no frameshift |
30.0 | GTCGCCCCC------------------------------------------------------------AGATTGGGGAC | 60 bp deleted → no frameshift |
30.0 | GTCGC------------------------------------------------------------GCCCAGATTGGGGAC | 60 bp deleted → no frameshift |
29.6 | GTCGCCCCCGCCCTGGCCACTTCCGG----------------------------------------------------AC | 52 bp deleted → frameshift |
28.2 | GTCGCCCC-------------------------------------------------------------AGATTGGGGAC | 61 bp deleted → frameshift |
25.6 | GTCGCCCCCGCCC-------------------------------------------------------CAGATTGGGGAC | 55 bp deleted → frameshift |
25.6 | GTCG-------------------------------------------------------GCGCGCGCCCAGATTGGGGAC | 55 bp deleted → frameshift |
25.0 | GTCGCCCCCGCCCTGG------------------------------------------------------------GGAC | 60 bp deleted → no frameshift |
24.4 | GTCGC--------------------------------------------------------GCGCGCCCAGATTGGGGAC | 56 bp deleted → frameshift |
23.2 | GTCGCCCCCGCC---------------------------------------------------------AGATTGGGGAC | 57 bp deleted → no frameshift |
20.8 | GTCGCCCCC-----------------------------------------------------------CAGATTGGGGAC | 59 bp deleted → frameshift |
18.8 | GTCGCCCCCGCCCTGG-------------------------------------------------------------GAC | 61 bp deleted → frameshift |
18.0 | GTCGCCCCCGCCCTGG--------------------------------------------------------------AC | 62 bp deleted → frameshift |
17.2 | GTCGCC---------------------------------------------------------------AGATTGGGGAC | 63 bp deleted → no frameshift |
15.0 | GTCGCCCCCGCCCTGGCCAC------------------------------------------------------------ | 60 bp deleted → no frameshift |
14.8 | GTCGCCCCCGCCCTGGCCACTT----------------------------------------------------GGGGAC | 52 bp deleted → frameshift |