← return to the list of all guides
The following table lists possible deletions. Each sequence below represents the context around the guide's target, with deleted nucleotides shown as "-". They are ranked by the "micro-homology score". This score is correlated to the likelihood of finding a particular deletion, as predicted by the method of Bae et al. 2014.
Bae-Score | Sequence | Effect |
---|---|---|
GCCCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGGGGCGCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGC | (Wild-type sequence) | |
485.6 | GCCCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCC----------GGCGCGCGCCCAGATTGGGGACAAAGGAAGC | 10 bp deleted → frameshift |
417.6 | GCCCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCG-------------GCGCGCGCCCAGATTGGGGACAAAGGAAGC | 13 bp deleted → frameshift |
346.2 | GCCCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGC-----------GCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGC | 11 bp deleted → frameshift |
329.4 | GCCCTGGCCACTTCCGGCGCGC----------------------------------GCCCAGATTGGGGACAAAGGAAGC | 34 bp deleted → frameshift |
327.6 | GCCCTGGCCACTTCCGGCGCGCCG--------------------------GCGCGCGCCCAGATTGGGGACAAAGGAAGC | 26 bp deleted → frameshift |
294.4 | GCCCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCC--------------------CAGATTGGGGACAAAGGAAGC | 20 bp deleted → frameshift |
269.4 | GCCCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGC----------------GCGCCCAGATTGGGGACAAAGGAAGC | 16 bp deleted → frameshift |
268.0 | GCCCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGC--------GCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGC | 8 bp deleted → frameshift |
268.0 | GCCCTGGCCACTTCCGGCGCGCCGAGTCCTTAGG--------GGGCGCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGC | 8 bp deleted → frameshift |
256.2 | GCCCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGC-----------------GCGCGCCCAGATTGGGGACAAAGGAAGC | 17 bp deleted → frameshift |
255.2 | GCCCTGGCCACTTCCGGCGCGCCGAGTCCTTAGG---------GGCGCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGC | 9 bp deleted → no frameshift |
247.0 | GCCCTGGCCACTTCCGGCGC----------------------------CGGCGCGCGCCCAGATTGGGGACAAAGGAAGC | 28 bp deleted → frameshift |
244.2 | GCCCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGC------------------GCCCAGATTGGGGACAAAGGAAGC | 18 bp deleted → no frameshift |
242.8 | GCCCTGGCCACTTCCGGCGCGCCGAGTCCTTAGG----------GCGCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGC | 10 bp deleted → frameshift |
231.0 | GCCCTGGCCACTTCCGGCGCGCC------------------------------------CAGATTGGGGACAAAGGAAGC | 36 bp deleted → no frameshift |
198.8 | GCCCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGC--------------GCGCGCCCAGATTGGGGACAAAGGAAGC | 14 bp deleted → frameshift |
190.2 | GCCCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCC-----------------------CAGATTGGGGACAAAGGAAGC | 23 bp deleted → frameshift |
175.0 | GCCCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCCA---------------------GATTGGGGACAAAGGAAGC | 21 bp deleted → no frameshift |
161.6 | GCCCTGGCCACTTCCGGCGCGC--------------------------------GCGCCCAGATTGGGGACAAAGGAAGC | 32 bp deleted → frameshift |
154.8 | GCCCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGC-------------------GCGCCCAGATTGGGGACAAAGGAAGC | 19 bp deleted → frameshift |
147.2 | GCCCTGGCCACTTCCGGCGCGCCGAGTCC--------------------GGCGCGCGCCCAGATTGGGGACAAAGGAAGC | 20 bp deleted → frameshift |
140.0 | GCCCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGC---------------------GCCCAGATTGGGGACAAAGGAAGC | 21 bp deleted → no frameshift |
126.8 | GCCCTGGCCACTTCCGGCGCGCCG-----------------------CCGGCGCGCGCCCAGATTGGGGACAAAGGAAGC | 23 bp deleted → frameshift |
120.4 | GCCCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCC------------------------AGATTGGGGACAAAGGAAGC | 24 bp deleted → no frameshift |
120.4 | GCCCTGGCCACTTCCGGCGCGC------------------------GCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGC | 24 bp deleted → no frameshift |
120.0 | GCCCTGGCCACTTCCGGCGC--------------------------------------CCAGATTGGGGACAAAGGAAGC | 38 bp deleted → frameshift |
114.8 | GCCCTGGCCACTTCCGG-------------------------GGGCGCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGC | 25 bp deleted → frameshift |
109.2 | GCCCTGGCCACTTCCGG--------------------------GGCGCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGC | 26 bp deleted → frameshift |
103.6 | GCCCTGGCCACTTCCGG---------------------------GCGCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGC | 27 bp deleted → no frameshift |
94.0 | GCCCTGGCCACTTCCGGCGCGCCG-----------------------------CGCGCCCAGATTGGGGACAAAGGAAGC | 29 bp deleted → frameshift |
94.0 | GCCCTGGCCACTTCCGGCGCG-----------------------------GCGCGCGCCCAGATTGGGGACAAAGGAAGC | 29 bp deleted → frameshift |
90.0 | GCCCTGGC--------------------------------------GCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGC | 38 bp deleted → frameshift |
89.2 | GCCCTGGCCACTTCCGGCGCGCCGAGTCC------------------------------CAGATTGGGGACAAAGGAAGC | 30 bp deleted → no frameshift |
89.2 | GCCCTGGCCACTTCCGGCGCGC------------------------------GCGCGCCCAGATTGGGGACAAAGGAAGC | 30 bp deleted → no frameshift |
89.2 | GCCCTGGCCACTTCCGGC------------------------------CGGCGCGCGCCCAGATTGGGGACAAAGGAAGC | 30 bp deleted → no frameshift |
84.8 | GCCCTGGCCACTTCCGGCGCGCCGAGTCC-------------------------------AGATTGGGGACAAAGGAAGC | 31 bp deleted → frameshift |
84.8 | GCCCTGGCCACTTCCGGCGCGCCG-------------------------------CGCCCAGATTGGGGACAAAGGAAGC | 31 bp deleted → frameshift |
84.8 | GCCCTGGCCACTTCCGGCG-------------------------------GCGCGCGCCCAGATTGGGGACAAAGGAAGC | 31 bp deleted → frameshift |
84.8 | GCCCTGGCCACTTCCG-------------------------------CCGGCGCGCGCCCAGATTGGGGACAAAGGAAGC | 31 bp deleted → frameshift |
81.0 | GCCCTGGCC----------------------------------------GGCGCGCGCCCAGATTGGGGACAAAGGAAGC | 40 bp deleted → frameshift |
76.8 | GCCCTGGCCACTTCCGGCGCGCCGAGTCCTTAGG---------------------------------GGACAAAGGAAGC | 33 bp deleted → no frameshift |
76.8 | GCCCTGGCCACTTCCGGCGCGCCG---------------------------------CCCAGATTGGGGACAAAGGAAGC | 33 bp deleted → no frameshift |
73.2 | GCCCTGGCCACTTCCGGCGCGCCGAGTCCTTAGG----------------------------------GACAAAGGAAGC | 34 bp deleted → frameshift |
70.5 | GCCCTGGCCACTTCCGGCGCGCCGAGTCCTTAG-----------------------------ATTGGGGACAAAGGAAGC | 29 bp deleted → frameshift |
69.6 | GCCCTGGCCACTTCCGGCGCGCCGAGTCCTTAGG-----------------------------------ACAAAGGAAGC | 35 bp deleted → frameshift |
69.6 | GCCCTGG-----------------------------------GGGCGCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGC | 35 bp deleted → frameshift |
66.6 | GCCCTGGC--------------------------------------------GCGCGCCCAGATTGGGGACAAAGGAAGC | 44 bp deleted → frameshift |
66.0 | GCCCTGG------------------------------------GGCGCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGC | 36 bp deleted → no frameshift |
62.8 | GCCCTGGCCACTTCCGGCGCGCC-------------------------------------AGATTGGGGACAAAGGAAGC | 37 bp deleted → frameshift |
62.8 | GCCCTGGCCACTTCCG-------------------------------------CGCGCCCAGATTGGGGACAAAGGAAGC | 37 bp deleted → frameshift |
62.8 | GCCCTGG-------------------------------------GCGCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGC | 37 bp deleted → frameshift |
61.0 | GCCCTGGCCACTTCCGGCGCGCCGAGTCCTTAGG------------------------------------------AAGC | 42 bp deleted → no frameshift |
60.6 | GCCCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCCA--------------------------------AAGGAAGC | 32 bp deleted → frameshift |
60.0 | GCC----------------------------------------------GGCGCGCGCCCAGATTGGGGACAAAGGAAGC | 46 bp deleted → frameshift |
56.8 | GCCCTGGCCACTTCCG---------------------------------------CGCCCAGATTGGGGACAAAGGAAGC | 39 bp deleted → no frameshift |
54.0 | GCCCTGGCCACTTCCGGC----------------------------------------CCAGATTGGGGACAAAGGAAGC | 40 bp deleted → frameshift |
51.6 | GCCCTGGCCACTTCCG-----------------------------------------CCCAGATTGGGGACAAAGGAAGC | 41 bp deleted → frameshift |
49.5 | GCCCTGGCCACTTCCGGCGCGCCGAG------------------------------------ATTGGGGACAAAGGAAGC | 36 bp deleted → no frameshift |
49.2 | GCCCTGGCC--------------------------------------------------CAGATTGGGGACAAAGGAAGC | 50 bp deleted → frameshift |
48.8 | GCCCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGC------------------------------------------ | 42 bp deleted → no frameshift |
48.8 | GCCC--------------------------------------------------------AGATTGGGGACAAAGGAAGC | 56 bp deleted → frameshift |
45.0 | GCCCTGGCCACTTCCGGCGCGCCGA--------------------------------------TTGGGGACAAAGGAAGC | 38 bp deleted → frameshift |
44.4 | GCCCTGGCCACTTCC--------------------------------------------CAGATTGGGGACAAAGGAAGC | 44 bp deleted → frameshift |
44.4 | GC--------------------------------------------GCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGC | 44 bp deleted → frameshift |
42.0 | GCCCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGC--------------------------------------------- | 45 bp deleted → no frameshift |
42.0 | GCCCTGGCCACTTCC---------------------------------------------AGATTGGGGACAAAGGAAGC | 45 bp deleted → no frameshift |
42.0 | GCCC---------------------------------------------GGCGCGCGCCCAGATTGGGGACAAAGGAAGC | 45 bp deleted → no frameshift |
40.0 | GCCCTGGC----------------------------------------------GCGCCCAGATTGGGGACAAAGGAAGC | 46 bp deleted → frameshift |
39.0 | GCCCTGGCCA---------------------------------------------------GATTGGGGACAAAGGAAGC | 51 bp deleted → no frameshift |
36.6 | GCCCTGGCCACTTCCGGCGCGCCGAGTCCTT----------------------------------GGGGACAAAGGAAGC | 34 bp deleted → frameshift |
36.4 | GCCCTGGC------------------------------------------------GCCCAGATTGGGGACAAAGGAAGC | 48 bp deleted → no frameshift |
32.8 | GCCCTGGCCACTTCCGG--------------------------------------------------GGACAAAGGAAGC | 50 bp deleted → frameshift |
32.8 | GC--------------------------------------------------GCGCGCCCAGATTGGGGACAAAGGAAGC | 50 bp deleted → frameshift |
31.5 | GCCCTGGCCACTTCCGGCGCGCCGA---------------------------------------------CAAAGGAAGC | 45 bp deleted → no frameshift |
31.2 | GCCCTGGCCACTTCCGG---------------------------------------------------GACAAAGGAAGC | 51 bp deleted → no frameshift |
30.0 | GCCCTGGCCACTTCCGGCGCGCCGAGTCCTTAG----------------------------------------------C | 46 bp deleted → frameshift |
29.6 | GCCCTGGCCACTTCCGG----------------------------------------------------ACAAAGGAAGC | 52 bp deleted → frameshift |
29.6 | GC----------------------------------------------------GCGCCCAGATTGGGGACAAAGGAAGC | 52 bp deleted → frameshift |
26.8 | GC------------------------------------------------------GCCCAGATTGGGGACAAAGGAAGC | 54 bp deleted → no frameshift |
25.8 | GCCCTGGCCACTTCCGGCGCGCCGAG-------------------------------------------------GAAGC | 49 bp deleted → frameshift |
25.6 | GCCC-------------------------------------------------------CAGATTGGGGACAAAGGAAGC | 55 bp deleted → frameshift |
25.0 | GCCCTGG------------------------------------------------------------GGACAAAGGAAGC | 60 bp deleted → no frameshift |
23.2 | GCC---------------------------------------------------------AGATTGGGGACAAAGGAAGC | 57 bp deleted → no frameshift |
22.2 | GCCCTGGCCACTTCCGGCGCGCCGA----------------------------------------------------AGC | 52 bp deleted → frameshift |
22.0 | GCCCTGGCCACTTCCGGCGCGC---------------------------------------------------------- | 58 bp deleted → frameshift |
21.3 | GCCCTGGCCACTTCCGGCGCGCCGAG-----------------------------------------------------C | 53 bp deleted → frameshift |
20.8 | GCCCTGGCCACTTCCGG-----------------------------------------------------------AAGC | 59 bp deleted → frameshift |
20.0 | GCCCTGGCCACTTCCGGCGC------------------------------------------------------------ | 60 bp deleted → no frameshift |
18.8 | GCCCTGG-------------------------------------------------------------GACAAAGGAAGC | 61 bp deleted → frameshift |
18.0 | GCCCTGGCCACTTCCGGC-------------------------------------------------------------- | 62 bp deleted → frameshift |
18.0 | GCCCTGG--------------------------------------------------------------ACAAAGGAAGC | 62 bp deleted → frameshift |
15.0 | GCCCTGGCCAC------------------------------------------------------------AAAGGAAGC | 60 bp deleted → no frameshift |
14.8 | GCCCTGGCCACTT----------------------------------------------------GGGGACAAAGGAAGC | 52 bp deleted → frameshift |
13.5 | GCCCTGGCCA--------------------------------------------------------------AAGGAAGC | 62 bp deleted → frameshift |
12.8 | GCCCTGG---------------------------------------------------------------------AAGC | 69 bp deleted → no frameshift |
10.8 | GCCCTGGC------------------------------------------------------------------------ | 72 bp deleted → no frameshift |
8.0 | GC------------------------------------------------------------------------------ | 78 bp deleted → no frameshift |