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Contents:In the table below, Illumina Nextera Handle sequences have been added and highlighted in bold. Primers for the on-target have been added for convenience. The table below is sorted by the CFD off-target score. Sites with very low CFD scores < 0.02 are unlikely to be cleaved, see our study Haeussler et al. 2016, Figure 2.
In the protocol by Matthew Canver, Harvard, two PCRs are run: one PCR to amplify the potential off-target, then a second PCR to extend the handles with Illumina barcodes. Please click here to download the protocol. Alternatively, you can have a look at Fu et al, 2014.
Name | Primer Sequence | Tm | CFD Score |
---|---|---|---|
ontarget_mm0__chr7 5.53 Mbp_chr7_5529726_F | TCGTCGGCAGCGTCTGGTGAGCTGCGAGAATAGC | 60.1 | 1.00 |
ontarget_mm0__chr7 5.53 Mbp_chr7_5529726_R | GTCTCGTGGGCTCGGCGGCTTCCTTTGTCCCCAAT | 60.6 | 1.00 |
mm4__chr9 37.37 Mbp_chr9_37370772_F | TCGTCGGCAGCGTCGAAACTGGGAAGGGAGTGGG | 59.9 | 0.68 |
mm4__chr9 37.37 Mbp_chr9_37370772_R | GTCTCGTGGGCTCGGCACGTGCTGGGGTCTTGG | 60.6 | 0.68 |
mm4__chr1 240.00 Mbp_chr1_239997994_F | Primer3: not found at this Tm | N.d. | 0.46 |
mm4__chr1 240.00 Mbp_chr1_239997994_R | Primer3: not found at this Tm | N.d. | 0.46 |
mm4__chr10 73.94 Mbp_chr10_73942030_F | Primer3: not found at this Tm | N.d. | 0.42 |
mm4__chr10 73.94 Mbp_chr10_73942030_R | Primer3: not found at this Tm | N.d. | 0.42 |
mm4__chr11 8.93 Mbp_chr11_8933338_F | TCGTCGGCAGCGTCCACTAGAGGCAGGAATGGGG | 59.5 | 0.35 |
mm4__chr11 8.93 Mbp_chr11_8933338_R | GTCTCGTGGGCTCGGTAGACAAACAGGCCCACACC | 59.8 | 0.35 |
mm4__chr18 21.90 Mbp_chr18_21903972_F | TCGTCGGCAGCGTCGCTGGCCTCTTGTTCACTCA | 60.2 | 0.33 |
mm4__chr18 21.90 Mbp_chr18_21903972_R | GTCTCGTGGGCTCGGCCGTGATCTCAAAGGCCCC | 60.4 | 0.33 |
mm3__chr22 18.04 Mbp_chr22_18044207_F | TCGTCGGCAGCGTCGCTGCTGATGGAGGCTACAA | 60.1 | 0.31 |
mm3__chr22 18.04 Mbp_chr22_18044207_R | GTCTCGTGGGCTCGGGAGTTTCAGAAGCCAGCCCT | 59.9 | 0.31 |
mm4__chr16 471.21 Kbp_chr16_471215_F | TCGTCGGCAGCGTCTCCCTTGCTTGTCTTGACCC | 59.8 | 0.29 |
mm4__chr16 471.21 Kbp_chr16_471215_R | GTCTCGTGGGCTCGGAAGACCTCGTGCTCAACAGG | 59.9 | 0.29 |
mm4__chr7 151.14 Mbp_chr7_151137344_F | TCGTCGGCAGCGTCCCACTAACCTCCAGCACCTG | 60.0 | 0.25 |
mm4__chr7 151.14 Mbp_chr7_151137344_R | GTCTCGTGGGCTCGGCACCCAACACTGAGACCACA | 59.8 | 0.25 |
mm4__chr17 81.17 Mbp_chr17_81165776_F | TCGTCGGCAGCGTCGAGGCCGGTTTGTGCTGG | 61.3 | 0.22 |
mm4__chr17 81.17 Mbp_chr17_81165776_R | GTCTCGTGGGCTCGGAATTAACCCTTTCCCCGCCC | 60.3 | 0.22 |
mm3__chr15 40.95 Mbp_chr15_40952429_F | TCGTCGGCAGCGTCTTCAGCTGCCTCTGTTTCCC | 60.2 | 0.18 |
mm3__chr15 40.95 Mbp_chr15_40952429_R | GTCTCGTGGGCTCGGGTCTTCTCCCTCGGCTTCTG | 59.8 | 0.18 |
mm4__chr19 19.63 Mbp_chr19_19627184_F | Primer3: not found at this Tm | N.d. | 0.14 |
mm4__chr19 19.63 Mbp_chr19_19627184_R | Primer3: not found at this Tm | N.d. | 0.14 |
mm4__chr15 63.94 Mbp_chr15_63941541_F | Primer3: not found at this Tm | N.d. | 0.13 |
mm4__chr15 63.94 Mbp_chr15_63941541_R | Primer3: not found at this Tm | N.d. | 0.13 |
mm3__chr17 63.70 Mbp_chr17_63700684_F | Primer3: not found at this Tm | N.d. | 0.11 |
mm3__chr17 63.70 Mbp_chr17_63700684_R | Primer3: not found at this Tm | N.d. | 0.11 |
mm4__chr4 40.70 Mbp_chr4_40698878_F | TCGTCGGCAGCGTCCAAGTTCAATGACCACAGGGC | 59.7 | 0.09 |
mm4__chr4 40.70 Mbp_chr4_40698878_R | GTCTCGTGGGCTCGGCCCATGCATTGTTTTGCTCCA | 59.9 | 0.09 |
mm4__chr8 51.41 Mbp_chr8_51408556_F | TCGTCGGCAGCGTCCTCGGTAACCCCTCAGCATC | 59.8 | 0.09 |
mm4__chr8 51.41 Mbp_chr8_51408556_R | GTCTCGTGGGCTCGGACGGTTTACCAGGAAGCCAG | 59.9 | 0.09 |
mm4__chr4 8.38 Mbp_chr4_8384463_F | TCGTCGGCAGCGTCCGGGCAGTGAATTCTCTTGC | 59.5 | 0.07 |
mm4__chr4 8.38 Mbp_chr4_8384463_R | GTCTCGTGGGCTCGGGAGTCCTTCTGGTGTGAGGC | 60.0 | 0.07 |
mm4__chr20 62.95 Mbp_chr20_62945192_F | TCGTCGGCAGCGTCCTCTGGCACTCGCTGAAGAA | 60.0 | 0.07 |
mm4__chr20 62.95 Mbp_chr20_62945192_R | GTCTCGTGGGCTCGGTTTTGAGTGGGATGCAGCCT | 59.8 | 0.07 |
mm4__chr6 125.96 Mbp_chr6_125956946_F | TCGTCGGCAGCGTCGGCGACGTCTCGAGGTAAAA | 60.1 | 0.06 |
mm4__chr6 125.96 Mbp_chr6_125956946_R | GTCTCGTGGGCTCGGCGCTGCGGTTCACCTGTT | 60.9 | 0.06 |
mm4__chr6 100.46 Mbp_chr6_100455318_F | Primer3: not found at this Tm | N.d. | 0.06 |
mm4__chr6 100.46 Mbp_chr6_100455318_R | Primer3: not found at this Tm | N.d. | 0.06 |
mm4__chr9 136.44 Mbp_chr9_136439893_F | Primer3: not found at this Tm | N.d. | 0.05 |
mm4__chr9 136.44 Mbp_chr9_136439893_R | Primer3: not found at this Tm | N.d. | 0.05 |
mm4__chr16 18.74 Mbp_chr16_18743876_F | Primer3: not found at this Tm | N.d. | 0.05 |
mm4__chr16 18.74 Mbp_chr16_18743876_R | Primer3: not found at this Tm | N.d. | 0.05 |
mm4__chr2 96.89 Mbp_chr2_96891703_F | TCGTCGGCAGCGTCCACCAACAGCAGCTCTCTCA | 59.9 | 0.04 |
mm4__chr2 96.89 Mbp_chr2_96891703_R | GTCTCGTGGGCTCGGAAACACTTCTGCCCAGCTCC | 60.5 | 0.04 |
mm4__chr21 33.10 Mbp_chr21_33101787_F | TCGTCGGCAGCGTCCTCAAGTGGGAGCTGAAGGG | 60.0 | 0.04 |
mm4__chr21 33.10 Mbp_chr21_33101787_R | GTCTCGTGGGCTCGGATGAATGGGAGCTGTCAGCC | 60.1 | 0.04 |
mm4__chr11 1.28 Mbp_chr11_1276307_F | TCGTCGGCAGCGTCGCAGCAGGAGAGACGGAC | 59.8 | 0.03 |
mm4__chr11 1.28 Mbp_chr11_1276307_R | GTCTCGTGGGCTCGGGGCAGAATGAACCCACACCT | 60.2 | 0.03 |
mm4__chr10 87.10 Mbp_chr10_87095463_F | TCGTCGGCAGCGTCGGGTCATGTGAGTCACGGG | 60.0 | 0.03 |
mm4__chr10 87.10 Mbp_chr10_87095463_R | GTCTCGTGGGCTCGGTTTCCTGCCCACGTGTCAG | 60.2 | 0.03 |
mm4__chr19 39.36 Mbp_chr19_39355529_F | TCGTCGGCAGCGTCAGACCTGAGCCCAGTAGGTT | 59.8 | 0.03 |
mm4__chr19 39.36 Mbp_chr19_39355529_R | GTCTCGTGGGCTCGGACCACATTCAGCTCCATCCC | 59.7 | 0.03 |
mm4__chr6 147.51 Mbp_chr6_147508196_F | Primer3: not found at this Tm | N.d. | 0.02 |
mm4__chr6 147.51 Mbp_chr6_147508196_R | Primer3: not found at this Tm | N.d. | 0.02 |
mm3__chr6 9.05 Mbp_chr6_9050342_F | TCGTCGGCAGCGTCTCAGAGAGCTCCCATCTCCC | 60.1 | 0.02 |
mm3__chr6 9.05 Mbp_chr6_9050342_R | GTCTCGTGGGCTCGGGCACCATTGACAACTGCAGG | 60.0 | 0.02 |
mm4__chr4 71.71 Mbp_chr4_71714482_F | TCGTCGGCAGCGTCACCTAGCAACTTTAGGAGCACT | 59.0 | 0.02 |
mm4__chr4 71.71 Mbp_chr4_71714482_R | GTCTCGTGGGCTCGGTGTTGACTCAATAAGGGGATAGCT | 59.2 | 0.02 |
mm4__chr20 62.96 Mbp_chr20_62963019_F | TCGTCGGCAGCGTCCTAGGGCTAAGGCAGACACC | 59.5 | 0.02 |
mm4__chr20 62.96 Mbp_chr20_62963019_R | GTCTCGTGGGCTCGGCACCTTTGAGAACCGCGTTC | 59.7 | 0.02 |
mm4__chr5 7.82 Mbp_chr5_7816421_F | Primer3: not found at this Tm | N.d. | 0.01 |
mm4__chr5 7.82 Mbp_chr5_7816421_R | Primer3: not found at this Tm | N.d. | 0.01 |
mm4__chr9 127.46 Mbp_chr9_127460417_F | Primer3: not found at this Tm | N.d. | 0.01 |
mm4__chr9 127.46 Mbp_chr9_127460417_R | Primer3: not found at this Tm | N.d. | 0.01 |
mm4__chr2 96.23 Mbp_chr2_96228909_F | Primer3: not found at this Tm | N.d. | 0.00 |
mm4__chr2 96.23 Mbp_chr2_96228909_R | Primer3: not found at this Tm | N.d. | 0.00 |
mm4__chr2 239.11 Mbp_chr2_239111613_F | TCGTCGGCAGCGTCCACAGACACGGGGAAGGTG | 60.3 | 0.00 |
mm4__chr2 239.11 Mbp_chr2_239111613_R | GTCTCGTGGGCTCGGCAGCTGAGGAACTACCAGGC | 60.1 | 0.00 |
mm4__chr12 48.08 Mbp_chr12_48080987_F | TCGTCGGCAGCGTCCTCCACTGACCCAACCTGTG | 60.2 | 0.00 |
mm4__chr12 48.08 Mbp_chr12_48080987_R | GTCTCGTGGGCTCGGGGACCACTCAGCCTTCCTTC | 60.0 | 0.00 |
mm4__chrX 71.16 Mbp_chrX_71163385_F | Primer3: not found at this Tm | N.d. | 0.00 |
mm4__chrX 71.16 Mbp_chrX_71163385_R | Primer3: not found at this Tm | N.d. | 0.00 |
mm4__chr9 125.53 Mbp_chr9_125527768_F | Primer3: not found at this Tm | N.d. | 0.00 |
mm4__chr9 125.53 Mbp_chr9_125527768_R | Primer3: not found at this Tm | N.d. | 0.00 |
mm4__chr7 94.01 Mbp_chr7_94012128_F | Primer3: not found at this Tm | N.d. | 0.00 |
mm4__chr7 94.01 Mbp_chr7_94012128_R | Primer3: not found at this Tm | N.d. | 0.00 |
mm4__chr7 54.70 Mbp_chr7_54697856_F | TCGTCGGCAGCGTCCACTTACGCGGGTCAGGAC | 60.4 | 0.00 |
mm4__chr7 54.70 Mbp_chr7_54697856_R | GTCTCGTGGGCTCGGGTTACCGCCAGCTCCTCAG | 60.1 | 0.00 |
mm4__chr6 168.07 Mbp_chr6_168073381_F | TCGTCGGCAGCGTCGAGTCTGACACAGGAAGCCC | 60.0 | 0.00 |
mm4__chr6 168.07 Mbp_chr6_168073381_R | GTCTCGTGGGCTCGGGGCCAGCCTTTCTGATGTGA | 60.3 | 0.00 |
mm4__chr4 21.22 Mbp_chr4_21221089_F | Primer3: not found at this Tm | N.d. | 0.00 |
mm4__chr4 21.22 Mbp_chr4_21221089_R | Primer3: not found at this Tm | N.d. | 0.00 |
mm4__chr20 62.33 Mbp_chr20_62328812_F | TCGTCGGCAGCGTCCTCTGGCACCAACTCCCTG | 60.0 | 0.00 |
mm4__chr20 62.33 Mbp_chr20_62328812_R | GTCTCGTGGGCTCGGCTGCCATGCCCATGTCATTG | 59.8 | 0.00 |
mm4__chr2 34.37 Mbp_chr2_34368486_F | TCGTCGGCAGCGTCAGAACCCTCCTGTGTGCATG | 59.9 | 0.00 |
mm4__chr2 34.37 Mbp_chr2_34368486_R | GTCTCGTGGGCTCGGCTAGCTGAGGGGCAGGAAAC | 60.1 | 0.00 |
mm4__chr2 20.53 Mbp_chr2_20525357_F | TCGTCGGCAGCGTCCTGCAGGGTCAGATGTGGAG | 60.1 | 0.00 |
mm4__chr2 20.53 Mbp_chr2_20525357_R | GTCTCGTGGGCTCGGACAAACCAACATCCCAGGGG | 60.1 | 0.00 |
mm4__chr19 5.88 Mbp_chr19_5876669_F | TCGTCGGCAGCGTCGCTGGGTGGGTGATAAAGCT | 60.0 | 0.00 |
mm4__chr19 5.88 Mbp_chr19_5876669_R | GTCTCGTGGGCTCGGGCCTTCTCCCTCCTCCTGA | 59.9 | 0.00 |
mm4__chr17 18.85 Mbp_chr17_18850909_F | TCGTCGGCAGCGTCCAGGAAGCAAAGCCACCAAG | 59.6 | 0.00 |
mm4__chr17 18.85 Mbp_chr17_18850909_R | GTCTCGTGGGCTCGGCCTATGCCACTGTCCTGCAA | 60.0 | 0.00 |
mm4__chr16 271.75 Kbp_chr16_271750_F | TCGTCGGCAGCGTCGCCCCTTCTTCCAATCAGGG | 60.3 | 0.00 |
mm4__chr16 271.75 Kbp_chr16_271750_R | GTCTCGTGGGCTCGGAACCTGAGGTTCCGTGGAAT | 58.9 | 0.00 |
mm4__chr15 83.65 Mbp_chr15_83654414_F | TCGTCGGCAGCGTCGTCTCCAAGCAGAGTCGGG | 59.7 | 0.00 |
mm4__chr15 83.65 Mbp_chr15_83654414_R | GTCTCGTGGGCTCGGGACTCTCCCTGAACCTTCCG | 59.4 | 0.00 |
mm4__chr15 25.01 Mbp_chr15_25013568_F | Primer3: not found at this Tm | N.d. | 0.00 |
mm4__chr15 25.01 Mbp_chr15_25013568_R | Primer3: not found at this Tm | N.d. | 0.00 |
mm4__chr13 47.55 Mbp_chr13_47553695_F | Primer3: not found at this Tm | N.d. | 0.00 |
mm4__chr13 47.55 Mbp_chr13_47553695_R | Primer3: not found at this Tm | N.d. | 0.00 |
mm4__chr11 65.00 Mbp_chr11_64996966_F | TCGTCGGCAGCGTCACAGAGGTGCATGGCTTAGG | 59.7 | 0.00 |
mm4__chr11 65.00 Mbp_chr11_64996966_R | GTCTCGTGGGCTCGGACTGAAACTTGGCCCTCTGG | 59.8 | 0.00 |
mm4__chr10 113.09 Mbp_chr10_113087620_F | TCGTCGGCAGCGTCAAATGCAGAGTGGGAGGCTC | 60.0 | 0.00 |
mm4__chr10 113.09 Mbp_chr10_113087620_R | GTCTCGTGGGCTCGGGAAGCTGAGAGATCTGCCCC | 59.8 | 0.00 |
mm4__chr1 94.54 Mbp_chr1_94541354_F | TCGTCGGCAGCGTCAAAACTCTCCAGCGGAAGGG | 59.9 | 0.00 |
mm4__chr1 94.54 Mbp_chr1_94541354_R | GTCTCGTGGGCTCGGCCAGCCCGGCTTGAATGAA | 60.6 | 0.00 |
mm3__chr20 50.25 Mbp_chr20_50246450_F | TCGTCGGCAGCGTCCCCACTGACCGGTTTTGGAT | 60.2 | 0.00 |
mm3__chr20 50.25 Mbp_chr20_50246450_R | GTCTCGTGGGCTCGGCTCACAACCAGGAAGCCAGA | 59.6 | 0.00 |
Primers underlined, off-targets in bold.
ontarget_mm0__chr7 5.53 Mbp_chr7_5529726 |
TGGTGAGCTGCGAGAATAGCCGGGCGCGCTGTGAGCCGAGGTCGCCCCCGCCCTGGCCACTTCCGGCGCGCCGAGTCCTT AGGCCGCCAGGGGGCGCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG |
mm4__chr9 37.37 Mbp_chr9_37370772 |
GAAACTGGGAAGGGAGTGGGGAGCAGCAGCAGAGCAAACAGAAAAGATGCCCGAAGGAAGCGAGTTCCTAGGCCACCAGG GGCCAAGACCCCAGCACGTG |
mm4__chr11 8.93 Mbp_chr11_8933338 |
CACTAGAGGCAGGAATGGGGGAGCCACTGGCGGCCTGGGGACTCTAGGATAGAATTTGTCCCTAGTCTAAACCAAAATAA CCAAAGGTGTGGGCCTGTTTGTCTA |
mm4__chr18 21.90 Mbp_chr18_21903972 |
GCTGGCCTCTTGTTCACTCATCTCCCTCTCCTCCTAATCTTCTAATAACTTTATTACTGGGAAAAAGGCCAACTAGGGAA AACCCCACTGGCGGCCTGAGGATTCTTGATCTGAAGGGGGCCTTTGAGATCACGG |
mm3__chr22 18.04 Mbp_chr22_18044207 |
GCTGCTGATGGAGGCTACAAACAGTGATAGAAGCATGCAGAAGCTACACAGCACAGGCCAAGGTGCTGTGGGAGAGGCGG AGGAGGAACACTGACCACTGGCGGCCTGGGGACACGGGAGGGCTGGCTTCTGAAACTC |
mm4__chr16 471.21 Kbp_chr16_471215 |
TCCCTTGCTTGTCTTGACCCCCCCCAGGGCCCCCAACTCCCACACATCTGTCCCTGGGGGCCTCCTTCCCAGGGAGTCCC GAGGCCGCCAGGGGTCCCGTCACTGGGTGGCTATGGGTGGCCTGTTGAGCACGAGGTCTT |
mm4__chr7 151.14 Mbp_chr7_151137344 |
CCACTAACCTCCAGCACCTGGCGGGCTCCTCCGCTTCAAGGTTGAAGCACCTCAGGTTCGGCCCCCGTGTTCTTAGACCG CCTGGGGCCATTTCTTTGTGGTCTCAGTGTTGGGTG |
mm4__chr17 81.17 Mbp_chr17_81165776 |
GAGGCCGGTTTGTGCTGGGGCCCAGGGCCTGCCCCTCCGAGATCTGGGGCCGCCAGGGGGTCCGGCTGCTTCTGCTGCTG GGCTCGGGGCGGGGAAAGGGTTAATT |
mm3__chr15 40.95 Mbp_chr15_40952429 |
TTCAGCTGCCTCTGTTTCCCTTTTACAGTCAGTGACATCCCCTGAGGGCAGTCCCTTGCTGCGTATTGGGTCAACCCCCG GCGGCCTGTGGACTCGGCTGGGAGGCCAGAAGCCGAGGGAGAAGAC |
mm4__chr4 40.70 Mbp_chr4_40698878 |
CAAGTTCAATGACCACAGGGCACTAACCCTGAGGCCTAAGGCAGCCAGGGGAGATTCAAATCTGGAGCAAAACAATGCAT GGG |
mm4__chr8 51.41 Mbp_chr8_51408556 |
CTCGGTAACCCCTCAGCATCCTAGTGCCAGGGTCCCCCAGGACCTTAGGCAGCCAGTGGCTGTAGGTGATGTGCTGCAGC TCCGCGCCCACGATCTTCCTGGCTTCCTGGTAAACCGT |
mm4__chr4 8.38 Mbp_chr4_8384463 |
CGGGCAGTGAATTCTCTTGCTCGGAATGCGGCTGCTGGCGGCCTGAGGACACACCCAGCGTCAACAACCTCTGTCCTCAA GACTCTCCCAGAATCCTGGGTCACCACGGCCTTTCCATGTGCCTCACACCAGAAGGACTC |
mm4__chr20 62.95 Mbp_chr20_62945192 |
CTCTGGCACTCGCTGAAGAATCTGGAAGGTTGCGGTTTGCTCTTCCAGTGTTCGGGGGCCTCTGGCTGCTGAAGGATTCG GTCTACCACGGAGGGCTGTGCTGTTAGGCTGCATCCCACTCAAAA |
mm4__chr6 125.96 Mbp_chr6_125956946 |
GGCGACGTCTCGAGGTAAAACGGAGGAGGTGCGGGACGCGGAGACTGCGCGGGCCCGGTAGCCCTGGANNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAGGTGAACCGCAGCG |
mm4__chr2 96.89 Mbp_chr2_96891703 |
CACCAACAGCAGCTCTCTCAGCCTCTTCCCAGAGGGAGAGGCTGGGCCAAGGCCTGAGGCAGCCAGAGGAGGTGGGGAAG GAGCTGGGCAGAAGTGTTT |
mm4__chr21 33.10 Mbp_chr21_33101787 |
CTCAAGTGGGAGCTGAAGGGACTTGGGAGCGAGGACGCCGGAGGGATGAGAGGCGCCTGGGCCGGTTCCTTAGGCAACCA GTGGCCCGTGGGCCTCCATAACTCTGCCCAGAGGCTGACAGCTCCCATTCAT |
mm4__chr11 1.28 Mbp_chr11_1276307 |
GCAGCAGGAGAGACGGACGGCAGCCTCCGGCGGGCGAAGGACCCGGCTTCAGATGCCCGCTGGCTGGCAATCAGGCAGAG CCTGGCCAACCGTGCCAGGCCCCCTTCCTCACTCCAGGTGTGGGTTCATTCTGCC |
mm4__chr10 87.10 Mbp_chr10_87095463 |
GGGTCATGTGAGTCACGGGCGCCCCTCCTTTCCGCCCGCGCGCCCTCGGAACGGGCGGCCCACCCTGGCCTGTCCTCTGG CGGCCTCAGGCCGGGGCCGGGCGTGCAGGGGCTGACACGTGGGCAGGAAA |
mm4__chr19 39.36 Mbp_chr19_39355529 |
AGACCTGAGCCCAGTAGGTTCAATGGGTCTTTGTATGAAGTTCTCAGTCCGGGGAACCTTAGTCCTTTGGCAGCCAGAGG GGGATGGAGCTGAATGTGGT |
mm3__chr6 9.05 Mbp_chr6_9050342 |
TCAGAGAGCTCCCATCTCCCACTGTGTGCAGCTGAGTTCCAAGCACTCCTGGCGGCATAATGACTGGGACAAAGATATTT CCTGCAGTTGTCAATGGTGC |
mm4__chr4 71.71 Mbp_chr4_71714482 |
ACCTAGCAACTTTAGGAGCACTCCAAGACCTGAGGCTGCCAGGGGTGTTGAGGAAACCAGAAAAGAGTATAGCTATCCCC TTATTGAGTCAACA |
mm4__chr20 62.96 Mbp_chr20_62963019 |
CTAGGGCTAAGGCAGACACCCAGGAAGACCTGCTGGGCACAGGTCAAGGCAGGGTGCAGGAGCAGCCGAGTCTTTGGGTG GCCAGGGGGCTCTGGAGGAGGCCGTGTGGAGGGTCGTTCAGAACGCGGTTCTCAAAGGTG |
mm4__chr2 239.11 Mbp_chr2_239111613 |
CACAGACACGGGGAAGGTGGCAGACGCGGGTGAGGACTGCGCCCGGGACAGAGGCCTGTGGCCGCCGAAGGACACGGGGA TGCCGGCGGCCTCCATGGACGCCTGGTAGTTCCTCAGCTG |
mm4__chr12 48.08 Mbp_chr12_48080987 |
CTCCACTGACCCAACCTGTGGCCTGGAGGGCTGTTTGGAAGGGTAAAATTGCCCAAGCAACCCCCAGTCCTCAGGCTGGC AGAGGAGGCAAAAGAAGGAAGGCTGAGTGGTCC |
mm4__chr7 54.70 Mbp_chr7_54697856 |
CACTTACGCGGGTCAGGACCCGTGTCCTTAGTCCCACAGAGGGACGGGACGGGCAGCAGGTGCGGTGGGTCGCCTAGCAG CTGAGGAGCTGGCGGTAAC |
mm4__chr6 168.07 Mbp_chr6_168073381 |
GAGTCTGACACAGGAAGCCCCAGATCCACACCTGCCCTCAGGGGCTCATGGTGTCCACTCAGGGTCCCCTGGGGGACTCA GGACTGGGTCTAAATGCATGAGGTCACATCAGAAAGGCTGGCC |
mm4__chr20 62.33 Mbp_chr20_62328812 |
CTCTGGCACCAACTCCCTGCCACTGGGCGCCCAAGGACTGGGGTACTCACGCCTGCAGTTGGGGAAGCCCCAGTATCCGG TGGCACAGCGGGAGCAGTCACGGCCAATGACATGGGCATGGCAG |
mm4__chr2 34.37 Mbp_chr2_34368486 |
AGAACCCTCCTGTGTGCATGTTGGTCAAGCTGCAGGGCTCCCTCCCCTGTGGTTAGCTTATGGCCCTCTGGAGGCCTATT GAATCGGAGCTAGGTCTGGCTCTGCAAGGTTTCCTGCCCCTCAGCTAG |
mm4__chr2 20.53 Mbp_chr2_20525357 |
CTGCAGGGTCAGATGTGGAGTGTCCCCTGCAGGCCTGAGGACTCAGCACTAGTGAAGGGCTCTCAGCAGCTTGCTCAACA GGCACTGTCCCCTGGGATGTTGGTTTGT |
mm4__chr19 5.88 Mbp_chr19_5876669 |
GCTGGGTGGGTGATAAAGCTGTCAGCCTGCTGGAAATTTCTCTCCCCTTGGGGCCTAAGGGCTGGGAGCCAAGGGCAGCT GCCGCTCAGGAGGAGGGAGAAGGC |
mm4__chr17 18.85 Mbp_chr17_18850909 |
CAGGAAGCAAAGCCACCAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTAGGAGGTGCTTCCAGTGA AGGGGGAAGGAAAAACTGCTTGCAGGACAGTGGCATAGG |
mm4__chr16 271.75 Kbp_chr16_271750 |
GCCCCTTCTTCCAATCAGGGATCTTTCGAGGAGACCTCTGGGGGCCTAAGGTCTGGCGATCTGTGGAATATTCCACGGAA CCTCAGGTT |
mm4__chr15 83.65 Mbp_chr15_83654414 |
GTCTCCAAGCAGAGTCGGGGCGTGCCACGCGGGCCCCAGGGGGCCTCAGGACTGGGGTGCTCCTCACTGCTGGGCACCTC GGGTCGGGCGCGCTTCGTGCCGTCCCGGAAGGTTCAGGGAGAGTC |
mm4__chr11 65.00 Mbp_chr11_64996966 |
ACAGAGGTGCATGGCTTAGGCGGGGGAGCAGAGTGGTCCCTCAGCAGCTGTGACTTCCCAGTGCCCTCTGGAGGCCTAAG GAAGTGGCAGCTCTTTAAATCCCCAGTGGCCACTCCGCCCCCAGAGGGCCAAGTTTCAGT |
mm4__chr10 113.09 Mbp_chr10_113087620 |
AAATGCAGAGTGGGAGGCTCTGCTTGCCAGACGGAGACCTTAGACCTCCAGGGGTGGAGAACGGAGTACTTCCTCTGGTG CTCGGCTTCCCTTCCTGGGGGCAGATCTCTCAGCTTC |
mm4__chr1 94.54 Mbp_chr1_94541354 |
AAAACTCTCCAGCGGAAGGGGCAGCGGGGTCTGGGGCGCCAACTCCCTCCCTGCAACTCCCGCCGGCGCCCGACGGACTC GGTTCATTCAAGCCGGGCTGG |
mm3__chr20 50.25 Mbp_chr20_50246450 |
CCCACTGACCGGTTTTGGATGTAGTTGGAGATGGAACTGGCCCTCTAGGCTTTGTCCCCTGGAGGCCTAGGGACTCTGTC TTCAGGGCAGTGCTGGCTGTCACTTTGGCCCAGCCCCTCTGGCTTCCTGGTTGTGAG |