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Micro-homology scoring of potential deletions

Guide: CGAGTCCTTAGGCCGCCAGG GGG

The following table lists possible deletions. Each sequence below represents the context around the guide's target, with deleted nucleotides shown as "-". They are ranked by the "micro-homology score". This score is correlated to the likelihood of finding a particular deletion, as predicted by the method of Bae et al. 2014.

Bae-Score Sequence Effect
CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGGGGCGCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG (Wild-type sequence)
485.6 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCC----------GGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG 10 bp deleted → frameshift
417.6 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCG-------------GCGCGCGCCCAGATTGGGGACAAAGGAAGCCG 13 bp deleted → frameshift
362.0 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGG--GCGCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG 2 bp deleted → frameshift
346.2 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGC-----------GCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG 11 bp deleted → frameshift
344.4 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGG---CGCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG 3 bp deleted → no frameshift
329.4 CCTGGCCACTTCCGGCGCGC----------------------------------GCCCAGATTGGGGACAAAGGAAGCCG 34 bp deleted → frameshift
327.6 CCTGGCCACTTCCGGCGCGCCG--------------------------GCGCGCGCCCAGATTGGGGACAAAGGAAGCCG 26 bp deleted → frameshift
294.4 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCC--------------------CAGATTGGGGACAAAGGAAGCCG 20 bp deleted → frameshift
269.4 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGC----------------GCGCCCAGATTGGGGACAAAGGAAGCCG 16 bp deleted → frameshift
268.0 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGC--------GCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG 8 bp deleted → frameshift
256.2 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGC-----------------GCGCGCCCAGATTGGGGACAAAGGAAGCCG 17 bp deleted → frameshift
255.2 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGG---------CGCGCGCCCAGATTGGGGACAAAGGAAGCCG 9 bp deleted → no frameshift
247.0 CCTGGCCACTTCCGGCGC----------------------------CGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG 28 bp deleted → frameshift
245.0 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAG---------------------ATTGGGGACAAAGGAAGCCG 21 bp deleted → no frameshift
244.2 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGC------------------GCCCAGATTGGGGACAAAGGAAGCCG 18 bp deleted → no frameshift
242.8 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGG----------GCGCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG 10 bp deleted → frameshift
231.0 CCTGGCCACTTCCGGCGCGCC------------------------------------CAGATTGGGGACAAAGGAAGCCG 36 bp deleted → no frameshift
198.8 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGC--------------GCGCGCCCAGATTGGGGACAAAGGAAGCCG 14 bp deleted → frameshift
190.2 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCC-----------------------CAGATTGGGGACAAAGGAAGCCG 23 bp deleted → frameshift
161.6 CCTGGCCACTTCCGGCGCGC--------------------------------GCGCCCAGATTGGGGACAAAGGAAGCCG 32 bp deleted → frameshift
154.8 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGC-------------------GCGCCCAGATTGGGGACAAAGGAAGCCG 19 bp deleted → frameshift
147.2 CCTGGCCACTTCCGGCGCGCCGAGTCC--------------------GGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG 20 bp deleted → frameshift
140.0 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGC---------------------GCCCAGATTGGGGACAAAGGAAGCCG 21 bp deleted → no frameshift
126.8 CCTGGCCACTTCCGGCGCGCCG-----------------------CCGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG 23 bp deleted → frameshift
120.4 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCC------------------------AGATTGGGGACAAAGGAAGCCG 24 bp deleted → no frameshift
120.4 CCTGGCCACTTCCGGCGCGC------------------------GCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG 24 bp deleted → no frameshift
120.0 CCTGGCCACTTCCGGCGC--------------------------------------CCAGATTGGGGACAAAGGAAGCCG 38 bp deleted → frameshift
114.8 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGG-------------------------GGACAAAGGAAGCCG 25 bp deleted → frameshift
109.2 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGG--------------------------GACAAAGGAAGCCG 26 bp deleted → frameshift
103.6 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGG---------------------------ACAAAGGAAGCCG 27 bp deleted → no frameshift
103.6 CCTGGCCACTTCCGG---------------------------GCGCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG 27 bp deleted → no frameshift
94.0 CCTGGCCACTTCCGGCGCGCCG-----------------------------CGCGCCCAGATTGGGGACAAAGGAAGCCG 29 bp deleted → frameshift
94.0 CCTGGCCACTTCCGGCGCG-----------------------------GCGCGCGCCCAGATTGGGGACAAAGGAAGCCG 29 bp deleted → frameshift
91.5 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGG----------------------------------AAGCCG 34 bp deleted → frameshift
90.0 CCTGGC--------------------------------------GCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG 38 bp deleted → frameshift
89.2 CCTGGCCACTTCCGGCGCGCCGAGTCC------------------------------CAGATTGGGGACAAAGGAAGCCG 30 bp deleted → no frameshift
89.2 CCTGGCCACTTCCGGCGCGC------------------------------GCGCGCCCAGATTGGGGACAAAGGAAGCCG 30 bp deleted → no frameshift
89.2 CCTGGCCACTTCCGGC------------------------------CGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG 30 bp deleted → no frameshift
84.8 CCTGGCCACTTCCGGCGCGCCGAGTCC-------------------------------AGATTGGGGACAAAGGAAGCCG 31 bp deleted → frameshift
84.8 CCTGGCCACTTCCGGCGCGCCG-------------------------------CGCCCAGATTGGGGACAAAGGAAGCCG 31 bp deleted → frameshift
84.8 CCTGGCCACTTCCGGCG-------------------------------GCGCGCGCCCAGATTGGGGACAAAGGAAGCCG 31 bp deleted → frameshift
84.8 CCTGGCCACTTCCG-------------------------------CCGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG 31 bp deleted → frameshift
84.0 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCG--------------------------------------------- 45 bp deleted → no frameshift
81.0 CCTGGCC----------------------------------------GGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG 40 bp deleted → frameshift
76.8 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGG---------------------------------GGACAAAGGAAGCCG 33 bp deleted → no frameshift
76.8 CCTGGCCACTTCCGGCGCGCCG---------------------------------CCCAGATTGGGGACAAAGGAAGCCG 33 bp deleted → no frameshift
73.2 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGG----------------------------------GACAAAGGAAGCCG 34 bp deleted → frameshift
73.2 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCC------------------------------------------G 42 bp deleted → no frameshift
70.5 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAG-----------------------------ATTGGGGACAAAGGAAGCCG 29 bp deleted → frameshift
69.6 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGG-----------------------------------ACAAAGGAAGCCG 35 bp deleted → frameshift
66.6 CCTGGC--------------------------------------------GCGCGCCCAGATTGGGGACAAAGGAAGCCG 44 bp deleted → frameshift
62.8 CCTGGCCACTTCCGGCGCGCC-------------------------------------AGATTGGGGACAAAGGAAGCCG 37 bp deleted → frameshift
62.8 CCTGGCCACTTCCG-------------------------------------CGCGCCCAGATTGGGGACAAAGGAAGCCG 37 bp deleted → frameshift
62.8 CCTGG-------------------------------------GCGCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG 37 bp deleted → frameshift
61.0 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGG------------------------------------------AAGCCG 42 bp deleted → no frameshift
60.6 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCCA--------------------------------AAGGAAGCCG 32 bp deleted → frameshift
56.8 CCTGGCCACTTCCG---------------------------------------CGCCCAGATTGGGGACAAAGGAAGCCG 39 bp deleted → no frameshift
54.0 CCTGGCCACTTCCGGC----------------------------------------CCAGATTGGGGACAAAGGAAGCCG 40 bp deleted → frameshift
51.6 CCTGGCCACTTCCG-----------------------------------------CCCAGATTGGGGACAAAGGAAGCCG 41 bp deleted → frameshift
49.5 CCTGGCCACTTCCGGCGCGCCGAG------------------------------------ATTGGGGACAAAGGAAGCCG 36 bp deleted → no frameshift
49.2 CCTGGCC--------------------------------------------------CAGATTGGGGACAAAGGAAGCCG 50 bp deleted → frameshift
45.0 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAG--------------------------------------CCG 38 bp deleted → frameshift
45.0 CCTGGCCACTTCCGGCGCGCCGA--------------------------------------TTGGGGACAAAGGAAGCCG 38 bp deleted → frameshift
44.4 CCTGGCCACTTCC--------------------------------------------CAGATTGGGGACAAAGGAAGCCG 44 bp deleted → frameshift
44.0 CCTGGCCACTTCCGGCGCGCCG---------------------------------------------------------- 58 bp deleted → frameshift
42.0 CCTGGCCACTTCC---------------------------------------------AGATTGGGGACAAAGGAAGCCG 45 bp deleted → no frameshift
42.0 CC---------------------------------------------GGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG 45 bp deleted → no frameshift
40.0 CCTGGC----------------------------------------------GCGCCCAGATTGGGGACAAAGGAAGCCG 46 bp deleted → frameshift
39.0 CCTGGCCA---------------------------------------------------GATTGGGGACAAAGGAAGCCG 51 bp deleted → no frameshift
36.6 CCTGGCCACTTCCGGCGCGCCGAGTCCTT----------------------------------GGGGACAAAGGAAGCCG 34 bp deleted → frameshift
36.4 CCTGGC------------------------------------------------GCCCAGATTGGGGACAAAGGAAGCCG 48 bp deleted → no frameshift
32.8 CCTGGCCACTTCCGG--------------------------------------------------GGACAAAGGAAGCCG 50 bp deleted → frameshift
31.5 CCTGGCCACTTCCGGCGCGCCGA---------------------------------------------CAAAGGAAGCCG 45 bp deleted → no frameshift
31.2 CCTGGCCACTTCCGG---------------------------------------------------GACAAAGGAAGCCG 51 bp deleted → no frameshift
30.0 CCTGGCCACTTCCGGCGCGCCGAGTCCTTAG----------------------------------------------CCG 46 bp deleted → frameshift
29.6 CCTGGCCACTTCCGGCGCGCCGAGTCC----------------------------------------------------G 52 bp deleted → frameshift
29.6 CCTGGCCACTTCCGG----------------------------------------------------ACAAAGGAAGCCG 52 bp deleted → frameshift
25.8 CCTGGCCACTTCCGGCGCGCCGAG-------------------------------------------------GAAGCCG 49 bp deleted → frameshift
25.6 CC-------------------------------------------------------CAGATTGGGGACAAAGGAAGCCG 55 bp deleted → frameshift
25.0 CCTGG------------------------------------------------------------GGACAAAGGAAGCCG 60 bp deleted → no frameshift
24.4 CC--------------------------------------------------------AGATTGGGGACAAAGGAAGCCG 56 bp deleted → frameshift
22.2 CCTGGCCACTTCCGGCGCGCCGA----------------------------------------------------AGCCG 52 bp deleted → frameshift
22.2 CCTGGCCACTTCCG------------------------------------------------------------------ 66 bp deleted → no frameshift
21.3 CCTGGCCACTTCCGGCGCGCCGAG-----------------------------------------------------CCG 53 bp deleted → frameshift
20.8 CCTGGCCACTTCCGG-----------------------------------------------------------AAGCCG 59 bp deleted → frameshift
20.0 CCTGGCCACTTCCGGCGC------------------------------------------------------------CG 60 bp deleted → no frameshift
18.8 CCTGGCCACTTCCGGCGCG------------------------------------------------------------- 61 bp deleted → frameshift
18.8 CCTGG-------------------------------------------------------------GACAAAGGAAGCCG 61 bp deleted → frameshift
18.0 CCTGGCCACTTCCGGC--------------------------------------------------------------CG 62 bp deleted → frameshift
18.0 CCTGG--------------------------------------------------------------ACAAAGGAAGCCG 62 bp deleted → frameshift
17.2 CCTGGCCACTTCCGGCG--------------------------------------------------------------- 63 bp deleted → no frameshift
16.2 CCTGGCC------------------------------------------------------------------------G 72 bp deleted → no frameshift
15.0 CCTGGCCAC------------------------------------------------------------AAAGGAAGCCG 60 bp deleted → no frameshift
14.8 CCTGGCCACTT----------------------------------------------------GGGGACAAAGGAAGCCG 52 bp deleted → frameshift
13.5 CCTGGCCA--------------------------------------------------------------AAGGAAGCCG 62 bp deleted → frameshift
12.8 CCTGG---------------------------------------------------------------------AAGCCG 69 bp deleted → no frameshift
8.4 CC-----------------------------------------------------------------------------G 77 bp deleted → frameshift
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CRISPR/Cas9 Guide Designer for chordate vertebrate ecdysozoans lophotrochozoans protostomes spongi corals plants butterflies metazoans genomes fruitflies insects nematodes mammals.