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The following table lists possible deletions. Each sequence below represents the context around the guide's target, with deleted nucleotides shown as "-". They are ranked by the "micro-homology score". This score is correlated to the likelihood of finding a particular deletion, as predicted by the method of Bae et al. 2014.
Bae-Score | Sequence | Effect |
---|---|---|
CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGGGGCGCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG | (Wild-type sequence) | |
485.6 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCC----------GGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG | 10 bp deleted → frameshift |
417.6 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCG-------------GCGCGCGCCCAGATTGGGGACAAAGGAAGCCG | 13 bp deleted → frameshift |
362.0 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGG--GCGCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG | 2 bp deleted → frameshift |
346.2 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGC-----------GCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG | 11 bp deleted → frameshift |
344.4 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGG---CGCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG | 3 bp deleted → no frameshift |
329.4 | CCTGGCCACTTCCGGCGCGC----------------------------------GCCCAGATTGGGGACAAAGGAAGCCG | 34 bp deleted → frameshift |
327.6 | CCTGGCCACTTCCGGCGCGCCG--------------------------GCGCGCGCCCAGATTGGGGACAAAGGAAGCCG | 26 bp deleted → frameshift |
294.4 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCC--------------------CAGATTGGGGACAAAGGAAGCCG | 20 bp deleted → frameshift |
269.4 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGC----------------GCGCCCAGATTGGGGACAAAGGAAGCCG | 16 bp deleted → frameshift |
268.0 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGC--------GCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG | 8 bp deleted → frameshift |
256.2 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGC-----------------GCGCGCCCAGATTGGGGACAAAGGAAGCCG | 17 bp deleted → frameshift |
255.2 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGG---------CGCGCGCCCAGATTGGGGACAAAGGAAGCCG | 9 bp deleted → no frameshift |
247.0 | CCTGGCCACTTCCGGCGC----------------------------CGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG | 28 bp deleted → frameshift |
245.0 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAG---------------------ATTGGGGACAAAGGAAGCCG | 21 bp deleted → no frameshift |
244.2 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGC------------------GCCCAGATTGGGGACAAAGGAAGCCG | 18 bp deleted → no frameshift |
242.8 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGG----------GCGCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG | 10 bp deleted → frameshift |
231.0 | CCTGGCCACTTCCGGCGCGCC------------------------------------CAGATTGGGGACAAAGGAAGCCG | 36 bp deleted → no frameshift |
198.8 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGC--------------GCGCGCCCAGATTGGGGACAAAGGAAGCCG | 14 bp deleted → frameshift |
190.2 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCC-----------------------CAGATTGGGGACAAAGGAAGCCG | 23 bp deleted → frameshift |
161.6 | CCTGGCCACTTCCGGCGCGC--------------------------------GCGCCCAGATTGGGGACAAAGGAAGCCG | 32 bp deleted → frameshift |
154.8 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGC-------------------GCGCCCAGATTGGGGACAAAGGAAGCCG | 19 bp deleted → frameshift |
147.2 | CCTGGCCACTTCCGGCGCGCCGAGTCC--------------------GGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG | 20 bp deleted → frameshift |
140.0 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGC---------------------GCCCAGATTGGGGACAAAGGAAGCCG | 21 bp deleted → no frameshift |
126.8 | CCTGGCCACTTCCGGCGCGCCG-----------------------CCGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG | 23 bp deleted → frameshift |
120.4 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCC------------------------AGATTGGGGACAAAGGAAGCCG | 24 bp deleted → no frameshift |
120.4 | CCTGGCCACTTCCGGCGCGC------------------------GCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG | 24 bp deleted → no frameshift |
120.0 | CCTGGCCACTTCCGGCGC--------------------------------------CCAGATTGGGGACAAAGGAAGCCG | 38 bp deleted → frameshift |
114.8 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGG-------------------------GGACAAAGGAAGCCG | 25 bp deleted → frameshift |
109.2 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGG--------------------------GACAAAGGAAGCCG | 26 bp deleted → frameshift |
103.6 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGG---------------------------ACAAAGGAAGCCG | 27 bp deleted → no frameshift |
103.6 | CCTGGCCACTTCCGG---------------------------GCGCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG | 27 bp deleted → no frameshift |
94.0 | CCTGGCCACTTCCGGCGCGCCG-----------------------------CGCGCCCAGATTGGGGACAAAGGAAGCCG | 29 bp deleted → frameshift |
94.0 | CCTGGCCACTTCCGGCGCG-----------------------------GCGCGCGCCCAGATTGGGGACAAAGGAAGCCG | 29 bp deleted → frameshift |
91.5 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGG----------------------------------AAGCCG | 34 bp deleted → frameshift |
90.0 | CCTGGC--------------------------------------GCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG | 38 bp deleted → frameshift |
89.2 | CCTGGCCACTTCCGGCGCGCCGAGTCC------------------------------CAGATTGGGGACAAAGGAAGCCG | 30 bp deleted → no frameshift |
89.2 | CCTGGCCACTTCCGGCGCGC------------------------------GCGCGCCCAGATTGGGGACAAAGGAAGCCG | 30 bp deleted → no frameshift |
89.2 | CCTGGCCACTTCCGGC------------------------------CGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG | 30 bp deleted → no frameshift |
84.8 | CCTGGCCACTTCCGGCGCGCCGAGTCC-------------------------------AGATTGGGGACAAAGGAAGCCG | 31 bp deleted → frameshift |
84.8 | CCTGGCCACTTCCGGCGCGCCG-------------------------------CGCCCAGATTGGGGACAAAGGAAGCCG | 31 bp deleted → frameshift |
84.8 | CCTGGCCACTTCCGGCG-------------------------------GCGCGCGCCCAGATTGGGGACAAAGGAAGCCG | 31 bp deleted → frameshift |
84.8 | CCTGGCCACTTCCG-------------------------------CCGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG | 31 bp deleted → frameshift |
84.0 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCG--------------------------------------------- | 45 bp deleted → no frameshift |
81.0 | CCTGGCC----------------------------------------GGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG | 40 bp deleted → frameshift |
76.8 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGG---------------------------------GGACAAAGGAAGCCG | 33 bp deleted → no frameshift |
76.8 | CCTGGCCACTTCCGGCGCGCCG---------------------------------CCCAGATTGGGGACAAAGGAAGCCG | 33 bp deleted → no frameshift |
73.2 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGG----------------------------------GACAAAGGAAGCCG | 34 bp deleted → frameshift |
73.2 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCC------------------------------------------G | 42 bp deleted → no frameshift |
70.5 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAG-----------------------------ATTGGGGACAAAGGAAGCCG | 29 bp deleted → frameshift |
69.6 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGG-----------------------------------ACAAAGGAAGCCG | 35 bp deleted → frameshift |
66.6 | CCTGGC--------------------------------------------GCGCGCCCAGATTGGGGACAAAGGAAGCCG | 44 bp deleted → frameshift |
62.8 | CCTGGCCACTTCCGGCGCGCC-------------------------------------AGATTGGGGACAAAGGAAGCCG | 37 bp deleted → frameshift |
62.8 | CCTGGCCACTTCCG-------------------------------------CGCGCCCAGATTGGGGACAAAGGAAGCCG | 37 bp deleted → frameshift |
62.8 | CCTGG-------------------------------------GCGCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG | 37 bp deleted → frameshift |
61.0 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGG------------------------------------------AAGCCG | 42 bp deleted → no frameshift |
60.6 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCCA--------------------------------AAGGAAGCCG | 32 bp deleted → frameshift |
56.8 | CCTGGCCACTTCCG---------------------------------------CGCCCAGATTGGGGACAAAGGAAGCCG | 39 bp deleted → no frameshift |
54.0 | CCTGGCCACTTCCGGC----------------------------------------CCAGATTGGGGACAAAGGAAGCCG | 40 bp deleted → frameshift |
51.6 | CCTGGCCACTTCCG-----------------------------------------CCCAGATTGGGGACAAAGGAAGCCG | 41 bp deleted → frameshift |
49.5 | CCTGGCCACTTCCGGCGCGCCGAG------------------------------------ATTGGGGACAAAGGAAGCCG | 36 bp deleted → no frameshift |
49.2 | CCTGGCC--------------------------------------------------CAGATTGGGGACAAAGGAAGCCG | 50 bp deleted → frameshift |
45.0 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAG--------------------------------------CCG | 38 bp deleted → frameshift |
45.0 | CCTGGCCACTTCCGGCGCGCCGA--------------------------------------TTGGGGACAAAGGAAGCCG | 38 bp deleted → frameshift |
44.4 | CCTGGCCACTTCC--------------------------------------------CAGATTGGGGACAAAGGAAGCCG | 44 bp deleted → frameshift |
44.0 | CCTGGCCACTTCCGGCGCGCCG---------------------------------------------------------- | 58 bp deleted → frameshift |
42.0 | CCTGGCCACTTCC---------------------------------------------AGATTGGGGACAAAGGAAGCCG | 45 bp deleted → no frameshift |
42.0 | CC---------------------------------------------GGCGCGCGCCCAGATTGGGGACAAAGGAAGCCG | 45 bp deleted → no frameshift |
40.0 | CCTGGC----------------------------------------------GCGCCCAGATTGGGGACAAAGGAAGCCG | 46 bp deleted → frameshift |
39.0 | CCTGGCCA---------------------------------------------------GATTGGGGACAAAGGAAGCCG | 51 bp deleted → no frameshift |
36.6 | CCTGGCCACTTCCGGCGCGCCGAGTCCTT----------------------------------GGGGACAAAGGAAGCCG | 34 bp deleted → frameshift |
36.4 | CCTGGC------------------------------------------------GCCCAGATTGGGGACAAAGGAAGCCG | 48 bp deleted → no frameshift |
32.8 | CCTGGCCACTTCCGG--------------------------------------------------GGACAAAGGAAGCCG | 50 bp deleted → frameshift |
31.5 | CCTGGCCACTTCCGGCGCGCCGA---------------------------------------------CAAAGGAAGCCG | 45 bp deleted → no frameshift |
31.2 | CCTGGCCACTTCCGG---------------------------------------------------GACAAAGGAAGCCG | 51 bp deleted → no frameshift |
30.0 | CCTGGCCACTTCCGGCGCGCCGAGTCCTTAG----------------------------------------------CCG | 46 bp deleted → frameshift |
29.6 | CCTGGCCACTTCCGGCGCGCCGAGTCC----------------------------------------------------G | 52 bp deleted → frameshift |
29.6 | CCTGGCCACTTCCGG----------------------------------------------------ACAAAGGAAGCCG | 52 bp deleted → frameshift |
25.8 | CCTGGCCACTTCCGGCGCGCCGAG-------------------------------------------------GAAGCCG | 49 bp deleted → frameshift |
25.6 | CC-------------------------------------------------------CAGATTGGGGACAAAGGAAGCCG | 55 bp deleted → frameshift |
25.0 | CCTGG------------------------------------------------------------GGACAAAGGAAGCCG | 60 bp deleted → no frameshift |
24.4 | CC--------------------------------------------------------AGATTGGGGACAAAGGAAGCCG | 56 bp deleted → frameshift |
22.2 | CCTGGCCACTTCCGGCGCGCCGA----------------------------------------------------AGCCG | 52 bp deleted → frameshift |
22.2 | CCTGGCCACTTCCG------------------------------------------------------------------ | 66 bp deleted → no frameshift |
21.3 | CCTGGCCACTTCCGGCGCGCCGAG-----------------------------------------------------CCG | 53 bp deleted → frameshift |
20.8 | CCTGGCCACTTCCGG-----------------------------------------------------------AAGCCG | 59 bp deleted → frameshift |
20.0 | CCTGGCCACTTCCGGCGC------------------------------------------------------------CG | 60 bp deleted → no frameshift |
18.8 | CCTGGCCACTTCCGGCGCG------------------------------------------------------------- | 61 bp deleted → frameshift |
18.8 | CCTGG-------------------------------------------------------------GACAAAGGAAGCCG | 61 bp deleted → frameshift |
18.0 | CCTGGCCACTTCCGGC--------------------------------------------------------------CG | 62 bp deleted → frameshift |
18.0 | CCTGG--------------------------------------------------------------ACAAAGGAAGCCG | 62 bp deleted → frameshift |
17.2 | CCTGGCCACTTCCGGCG--------------------------------------------------------------- | 63 bp deleted → no frameshift |
16.2 | CCTGGCC------------------------------------------------------------------------G | 72 bp deleted → no frameshift |
15.0 | CCTGGCCAC------------------------------------------------------------AAAGGAAGCCG | 60 bp deleted → no frameshift |
14.8 | CCTGGCCACTT----------------------------------------------------GGGGACAAAGGAAGCCG | 52 bp deleted → frameshift |
13.5 | CCTGGCCA--------------------------------------------------------------AAGGAAGCCG | 62 bp deleted → frameshift |
12.8 | CCTGG---------------------------------------------------------------------AAGCCG | 69 bp deleted → no frameshift |
8.4 | CC-----------------------------------------------------------------------------G | 77 bp deleted → frameshift |