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The following table lists possible deletions. Each sequence below represents the context around the guide's target, with deleted nucleotides shown as "-". They are ranked by the "micro-homology score". This score is correlated to the likelihood of finding a particular deletion, as predicted by the method of Bae et al. 2014.
Bae-Score | Sequence | Effect |
---|---|---|
GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGCGCGCGCCGGCGCCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG | (Wild-type sequence) | |
607.0 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGCGC----------CCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 10 bp deleted → frameshift |
592.8 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGCGCGCGC------CCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 6 bp deleted → no frameshift |
536.0 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGCGCGC--------CCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 8 bp deleted → frameshift |
344.4 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGCGCGCG---GCGCCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 3 bp deleted → no frameshift |
327.6 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGCGCGCGC----GCCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 4 bp deleted → frameshift |
311.6 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGCGCG-----GCGCCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 5 bp deleted → frameshift |
294.4 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGCG--------------------GCCTAAGGACTCGGCGCGCCGGAAG | 20 bp deleted → frameshift |
282.0 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGCG-------GCGCCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 7 bp deleted → frameshift |
269.4 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGCGCGCG----------------GCCTAAGGACTCGGCGCGCCGGAAG | 16 bp deleted → frameshift |
245.0 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGG---------------------CGGCCTAAGGACTCGGCGCGCCGGAAG | 21 bp deleted → no frameshift |
244.2 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGCGCG------------------GCCTAAGGACTCGGCGCGCCGGAAG | 18 bp deleted → no frameshift |
240.8 | GGCCGGCCCGGCTTCCTTTGTCCCC------------------------CTGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 24 bp deleted → no frameshift |
231.0 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGCGCGC------------------------------------CGGAAG | 36 bp deleted → no frameshift |
230.8 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGG-----------CGCCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 11 bp deleted → frameshift |
229.6 | GGCCGGCCCGGCTTCCTTTGTCCCC-------------------------TGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 25 bp deleted → frameshift |
219.6 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGCGCGCGC----------------------------------CGGAAG | 34 bp deleted → frameshift |
219.6 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGC------------CCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 12 bp deleted → no frameshift |
198.8 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGCGCGCGC--------------GGCCTAAGGACTCGGCGCGCCGGAAG | 14 bp deleted → frameshift |
190.2 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGC-----------------------CTAAGGACTCGGCGCGCCGGAAG | 23 bp deleted → frameshift |
190.2 | GGCCGGCCCGGCTTCCTTTGTCCCC-----------------------CCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 23 bp deleted → frameshift |
170.8 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGCGCGCGC-----------------CTAAGGACTCGGCGCGCCGGAAG | 17 bp deleted → frameshift |
163.8 | GGCCGGCCCGGCTTCCTTTGTCCC--------------------------TGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 26 bp deleted → frameshift |
161.6 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGCGCGCGC--------------------------------GCCGGAAG | 32 bp deleted → frameshift |
161.6 | GGCCGGCCCGGC--------------------------------GCCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 32 bp deleted → frameshift |
154.8 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGCGCGC-------------------CTAAGGACTCGGCGCGCCGGAAG | 19 bp deleted → frameshift |
140.0 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGCGC---------------------CTAAGGACTCGGCGCGCCGGAAG | 21 bp deleted → no frameshift |
133.2 | GGCCGGCCCGGCTTCCTTTGTCCCC----------------------CCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 22 bp deleted → frameshift |
125.6 | GGCCGGC-------------------------------------GCCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 37 bp deleted → frameshift |
120.4 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGG------------------------CCTAAGGACTCGGCGCGCCGGAAG | 24 bp deleted → no frameshift |
120.0 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGCGC--------------------------------------CGGAAG | 38 bp deleted → frameshift |
113.6 | GGCCGGCCC---------------------------------------CCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 39 bp deleted → no frameshift |
103.6 | GGCCGGCCCGGCTTCCTTTGTCC---------------------------TGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 27 bp deleted → no frameshift |
94.0 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGCGCGCG-----------------------------GCGCGCCGGAAG | 29 bp deleted → frameshift |
91.5 | GGCCGGCCCGGCTTCCT----------------------------------GGCGGCCTAAGGACTCGGCGCGCCGGAAG | 34 bp deleted → frameshift |
89.2 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGCGCGCGC------------------------------GCGCCGGAAG | 30 bp deleted → no frameshift |
89.2 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGG------------------------------ACTCGGCGCGCCGGAAG | 30 bp deleted → no frameshift |
84.8 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGCGCG-------------------------------GCGCGCCGGAAG | 31 bp deleted → frameshift |
84.8 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGG-------------------------------ACTCGGCGCGCCGGAAG | 31 bp deleted → frameshift |
84.8 | GGCCGGCCCGGCTTCC-------------------------------CCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 31 bp deleted → frameshift |
84.0 | GGCCGGCCCGGC---------------------------------------------CTAAGGACTCGGCGCGCCGGAAG | 45 bp deleted → no frameshift |
82.0 | GGCCGGCC--------------------------------------------------TAAGGACTCGGCGCGCCGGAAG | 50 bp deleted → frameshift |
81.0 | GGCCGGCCC----------------------------------------CTGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 40 bp deleted → frameshift |
80.8 | GGCCGGCCCGGCTTCC--------------------------------CCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 32 bp deleted → frameshift |
77.4 | GGCCGGCCC-----------------------------------------TGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 41 bp deleted → frameshift |
77.4 | GGC-----------------------------------------GCCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 41 bp deleted → frameshift |
76.8 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGCG---------------------------------GCGCGCCGGAAG | 33 bp deleted → no frameshift |
76.8 | GGCCGGCCCGGCTTCCTTTGTCCCC---------------------------------TAAGGACTCGGCGCGCCGGAAG | 33 bp deleted → no frameshift |
76.8 | GGCCGGCCCGGCTTCC---------------------------------CTGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 33 bp deleted → no frameshift |
73.2 | GGCCGGCCCGGCTTCCTTTGTCCC----------------------------------TAAGGACTCGGCGCGCCGGAAG | 34 bp deleted → frameshift |
73.2 | GGCCGGCCCGGC----------------------------------CCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 34 bp deleted → frameshift |
73.2 | GGCCGGCCCGGC------------------------------------------GGCCTAAGGACTCGGCGCGCCGGAAG | 42 bp deleted → no frameshift |
70.5 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCT-----------------------------AAGGACTCGGCGCGCCGGAAG | 29 bp deleted → frameshift |
69.6 | GGCC-------------------------------------------CCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 43 bp deleted → frameshift |
69.6 | GGCCGGCCCGGCTTCCTTTGTCC-----------------------------------TAAGGACTCGGCGCGCCGGAAG | 35 bp deleted → frameshift |
69.6 | GGCCGGCCCG-----------------------------------CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 35 bp deleted → frameshift |
62.8 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGCGCGCG-------------------------------------GAAG | 37 bp deleted → frameshift |
62.8 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGG-------------------------------------CGCGCCGGAAG | 37 bp deleted → frameshift |
61.0 | GGCCGGCCCGGCTTCCT------------------------------------------AAGGACTCGGCGCGCCGGAAG | 42 bp deleted → no frameshift |
60.6 | GGCCGGCCCGGCTTCCTTTG--------------------------------GCGGCCTAAGGACTCGGCGCGCCGGAAG | 32 bp deleted → frameshift |
60.0 | GGCCGGCCC--------------------------------------CCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 38 bp deleted → frameshift |
57.0 | GGCCGGC-----------------------------------------------GGCCTAAGGACTCGGCGCGCCGGAAG | 47 bp deleted → frameshift |
56.8 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGCGCG---------------------------------------GAAG | 39 bp deleted → no frameshift |
54.0 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGC----------------------------------------CGGAAG | 40 bp deleted → frameshift |
54.0 | GGCCG----------------------------------------CCCCCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 40 bp deleted → frameshift |
53.6 | GGCC------------------------------------------------------TAAGGACTCGGCGCGCCGGAAG | 54 bp deleted → no frameshift |
51.6 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGGCG-----------------------------------------GAAG | 41 bp deleted → frameshift |
49.5 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCT------------------------------------CGGCGCGCCGGAAG | 36 bp deleted → no frameshift |
48.8 | GGCCGGCC------------------------------------------TGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 42 bp deleted → no frameshift |
46.8 | GGC---------------------------------------------------GGCCTAAGGACTCGGCGCGCCGGAAG | 51 bp deleted → no frameshift |
45.0 | GGCCGGCCCGGCTTCCTTTGTCCCCAATC--------------------------------------GGCGCGCCGGAAG | 38 bp deleted → frameshift |
45.0 | GGCCGGCCCGGCT--------------------------------------GGCGGCCTAAGGACTCGGCGCGCCGGAAG | 38 bp deleted → frameshift |
44.4 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGGG--------------------------------------------AAG | 44 bp deleted → frameshift |
44.4 | GGCC--------------------------------------------CCTGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 44 bp deleted → frameshift |
44.0 | GGCCGGCCCGGC----------------------------------------------------------GCGCCGGAAG | 58 bp deleted → frameshift |
42.0 | GGCCGGCCCGGCTTCCTTTGTCCCCAATCTGG---------------------------------------------AAG | 45 bp deleted → no frameshift |
42.0 | GGCC---------------------------------------------CTGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 45 bp deleted → no frameshift |
40.0 | GGCC----------------------------------------------TGGCGGCCTAAGGACTCGGCGCGCCGGAAG | 46 bp deleted → frameshift |
36.6 | GGCCGGCCCGGCTTCCTTTGTCCCCAA----------------------------------GGACTCGGCGCGCCGGAAG | 34 bp deleted → frameshift |
34.4 | GGCCGGCCC-------------------------------------------------TAAGGACTCGGCGCGCCGGAAG | 49 bp deleted → frameshift |
34.4 | GGCCGGC---------------------------------------------------------------GCGCCGGAAG | 63 bp deleted → no frameshift |
32.8 | GGCCGGCCCGGCTTCCTTTGTCCCC--------------------------------------------------GGAAG | 50 bp deleted → frameshift |
31.5 | GGCCGGCCCGGCTTCCTTTGTC---------------------------------------------GGCGCGCCGGAAG | 45 bp deleted → no frameshift |
31.2 | GGCCGGCCCGGCTTCCTTTGTCCC---------------------------------------------------GGAAG | 51 bp deleted → no frameshift |
30.0 | GGCCGGCCCGGCT----------------------------------------------AAGGACTCGGCGCGCCGGAAG | 46 bp deleted → frameshift |
29.6 | GGCCGGCCCGGCTTCCTTTGTCC----------------------------------------------------GGAAG | 52 bp deleted → frameshift |
29.6 | GGCCGGCCCGG----------------------------------------------------ACTCGGCGCGCCGGAAG | 52 bp deleted → frameshift |
29.6 | GGCCGGCCCGG------------------------------------------------------------------AAG | 66 bp deleted → no frameshift |
29.0 | GGCCGG-----------------------------------------------------------------------AAG | 71 bp deleted → frameshift |
25.8 | GGCCGGCCCGGCTTCCT-------------------------------------------------CGGCGCGCCGGAAG | 49 bp deleted → frameshift |
23.2 | GGCCGG---------------------------------------------------------ACTCGGCGCGCCGGAAG | 57 bp deleted → no frameshift |
22.2 | GGCCGGCCCGGCTTC----------------------------------------------------GGCGCGCCGGAAG | 52 bp deleted → frameshift |
21.3 | GGCCGGCCCGGCT-----------------------------------------------------CGGCGCGCCGGAAG | 53 bp deleted → frameshift |
21.0 | GGCCGGCC-------------------------------------------------------------------GGAAG | 67 bp deleted → frameshift |
21.0 | GGC-------------------------------------------------------------------GCGCCGGAAG | 67 bp deleted → frameshift |
20.8 | GGCCGGCCCGGCTTCC-----------------------------------------------------------GGAAG | 59 bp deleted → frameshift |
20.0 | GGCCGGCCCGGC------------------------------------------------------------GCCGGAAG | 60 bp deleted → no frameshift |
18.8 | GGCCGGCCCG-------------------------------------------------------------CGCCGGAAG | 61 bp deleted → frameshift |
18.8 | GG-------------------------------------------------------------ACTCGGCGCGCCGGAAG | 61 bp deleted → frameshift |
18.0 | GGCCGGCCCGGC--------------------------------------------------------------CGGAAG | 62 bp deleted → frameshift |
17.2 | GGCCGGCCCG---------------------------------------------------------------CCGGAAG | 63 bp deleted → no frameshift |
15.6 | GGCCGGC-----------------------------------------------------------------GCCGGAAG | 65 bp deleted → frameshift |
14.8 | GGCCGGCCCGGCTTCCTTTGTCCCCAA----------------------------------------------------G | 52 bp deleted → frameshift |
14.8 | GGCCG------------------------------------------------------------------CGCCGGAAG | 66 bp deleted → no frameshift |
13.2 | GGCCG--------------------------------------------------------------------CCGGAAG | 68 bp deleted → frameshift |
12.8 | GGC---------------------------------------------------------------------GCCGGAAG | 69 bp deleted → no frameshift |
9.6 | GG---------------------------------------------------------------------------AAG | 75 bp deleted → no frameshift |