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Micro-homology scoring of potential deletions

Guide: CTTAGGCCGCCAGGGGGCGC CGG

The following table lists possible deletions. Each sequence below represents the context around the guide's target, with deleted nucleotides shown as "-". They are ranked by the "micro-homology score". This score is correlated to the likelihood of finding a particular deletion, as predicted by the method of Bae et al. 2014.

Bae-Score Sequence Effect
CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGGGGCGCCGGCGCGCGCCCAGATTGGGGACAAAGGAAGCCGGGCCGG (Wild-type sequence)
741.0 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGGGGCGC------GCGCCCAGATTGGGGACAAAGGAAGCCGGGCCGG 6 bp deleted → no frameshift
536.0 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGGGGCGC--------GCCCAGATTGGGGACAAAGGAAGCCGGGCCGG 8 bp deleted → frameshift
485.6 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGGGGCGC----------CCAGATTGGGGACAAAGGAAGCCGGGCCGG 10 bp deleted → frameshift
344.4 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGGGGCG---GCGCGCGCCCAGATTGGGGACAAAGGAAGCCGGGCCGG 3 bp deleted → no frameshift
327.6 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGGGGCGC----GCGCGCCCAGATTGGGGACAAAGGAAGCCGGGCCGG 4 bp deleted → frameshift
294.4 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCC--------------------CAGATTGGGGACAAAGGAAGCCGGGCCGG 20 bp deleted → frameshift
292.8 CACTTCCGGCGCGC----------------------------------GCCCAGATTGGGGACAAAGGAAGCCGGGCCGG 34 bp deleted → frameshift
282.0 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGGG-------CGCGCGCCCAGATTGGGGACAAAGGAAGCCGGGCCGG 7 bp deleted → frameshift
269.4 CACTTCCGGCGCGCCGAGTCCTTAGGCCGC----------------GCGCCCAGATTGGGGACAAAGGAAGCCGGGCCGG 16 bp deleted → frameshift
268.0 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGG--------CGCGCGCCCAGATTGGGGACAAAGGAAGCCGGGCCGG 8 bp deleted → frameshift
256.2 CACTTCCGGCGCGCCGAGTCCTTAGGC-----------------GCGCGCCCAGATTGGGGACAAAGGAAGCCGGGCCGG 17 bp deleted → frameshift
255.2 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGG---------CGCGCGCCCAGATTGGGGACAAAGGAAGCCGGGCCGG 9 bp deleted → no frameshift
245.0 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAG---------------------ATTGGGGACAAAGGAAGCCGGGCCGG 21 bp deleted → no frameshift
244.2 CACTTCCGGCGCGCCGAGTCCTTAGGCCGC------------------GCCCAGATTGGGGACAAAGGAAGCCGGGCCGG 18 bp deleted → no frameshift
240.8 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGGGG------------------------ACAAAGGAAGCCGGGCCGG 24 bp deleted → no frameshift
231.0 CACTTCCGGCGCGCC------------------------------------CAGATTGGGGACAAAGGAAGCCGGGCCGG 36 bp deleted → no frameshift
229.6 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGGG-------------------------ACAAAGGAAGCCGGGCCGG 25 bp deleted → frameshift
219.6 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGGGGC------------CCAGATTGGGGACAAAGGAAGCCGGGCCGG 12 bp deleted → no frameshift
208.8 CACTTCCGGCGCGCCGAGTCCTTAGGCCG-------------GCGCGCGCCCAGATTGGGGACAAAGGAAGCCGGGCCGG 13 bp deleted → frameshift
198.8 CACTTCCGGCGCGCCGAGTCCTTAGGCCGC--------------GCGCGCCCAGATTGGGGACAAAGGAAGCCGGGCCGG 14 bp deleted → frameshift
190.2 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGGGG-----------------------GACAAAGGAAGCCGGGCCGG 23 bp deleted → frameshift
190.2 CACTTCCGGCGCGCCGAGTCCTTAGGCC-----------------------CAGATTGGGGACAAAGGAAGCCGGGCCGG 23 bp deleted → frameshift
163.8 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGG--------------------------ACAAAGGAAGCCGGGCCGG 26 bp deleted → frameshift
161.6 CACTTCCGGCGCGC--------------------------------GCGCCCAGATTGGGGACAAAGGAAGCCGGGCCGG 32 bp deleted → frameshift
154.8 CACTTCCGGCGCGCCGAGTCCTTAGGC-------------------GCGCCCAGATTGGGGACAAAGGAAGCCGGGCCGG 19 bp deleted → frameshift
140.0 CACTTCCGGCGCGCCGAGTCCTTAGGC---------------------GCCCAGATTGGGGACAAAGGAAGCCGGGCCGG 21 bp deleted → no frameshift
133.2 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGGGG----------------------GGACAAAGGAAGCCGGGCCGG 22 bp deleted → frameshift
120.4 CACTTCCGGCGCGCCGAGTCCTTAGGCC------------------------AGATTGGGGACAAAGGAAGCCGGGCCGG 24 bp deleted → no frameshift
120.0 CACTTCCGGCGC--------------------------------------CCAGATTGGGGACAAAGGAAGCCGGGCCGG 38 bp deleted → frameshift
113.6 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGGGGC---------------------------------------CGG 39 bp deleted → no frameshift
109.2 CACTTCCGGCGCGCCG--------------------------GCGCGCGCCCAGATTGGGGACAAAGGAAGCCGGGCCGG 26 bp deleted → frameshift
103.6 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGG---------------------------ACAAAGGAAGCCGGGCCGG 27 bp deleted → no frameshift
94.0 CACTTCCGGCGCGCCG-----------------------------CGCGCCCAGATTGGGGACAAAGGAAGCCGGGCCGG 29 bp deleted → frameshift
94.0 CACTTCCGGCGCG-----------------------------GCGCGCGCCCAGATTGGGGACAAAGGAAGCCGGGCCGG 29 bp deleted → frameshift
91.5 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGG----------------------------------AAGCCGGGCCGG 34 bp deleted → frameshift
89.2 CACTTCCGGCGCGCCGAGTCC------------------------------CAGATTGGGGACAAAGGAAGCCGGGCCGG 30 bp deleted → no frameshift
89.2 CACTTCCGGCGCGC------------------------------GCGCGCCCAGATTGGGGACAAAGGAAGCCGGGCCGG 30 bp deleted → no frameshift
84.8 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGGGG-------------------------------AAGCCGGGCCGG 31 bp deleted → frameshift
84.8 CACTTCCGGCGCGCCGAGTCC-------------------------------AGATTGGGGACAAAGGAAGCCGGGCCGG 31 bp deleted → frameshift
84.8 CACTTCCGGCGCGCCG-------------------------------CGCCCAGATTGGGGACAAAGGAAGCCGGGCCGG 31 bp deleted → frameshift
84.8 CACTTCCGGCG-------------------------------GCGCGCGCCCAGATTGGGGACAAAGGAAGCCGGGCCGG 31 bp deleted → frameshift
84.0 CACTTCCGGCGCGCCGAGTCCTTAGGCCG---------------------------------------------GGCCGG 45 bp deleted → no frameshift
82.0 CACTTCCGGCGCGCCGAGTCCTTAGGCCG--------------------------------------------------G 50 bp deleted → frameshift
81.0 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGGG----------------------------------------CCGG 40 bp deleted → frameshift
80.8 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGGGGCGC--------------------------------CGGGCCGG 32 bp deleted → frameshift
80.8 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGGG--------------------------------AAGCCGGGCCGG 32 bp deleted → frameshift
77.4 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGG-----------------------------------------CCGG 41 bp deleted → frameshift
76.8 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGG---------------------------------AAGCCGGGCCGG 33 bp deleted → no frameshift
76.8 CACTTCCGGCGCGCCGAGTCCTTAGG---------------------------------GGACAAAGGAAGCCGGGCCGG 33 bp deleted → no frameshift
76.8 CACTTCCGGCGCGCCG---------------------------------CCCAGATTGGGGACAAAGGAAGCCGGGCCGG 33 bp deleted → no frameshift
73.2 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGGGGC----------------------------------CGGGCCGG 34 bp deleted → frameshift
73.2 CACTTCCGGCGCGCCGAGTCCTTAGG----------------------------------GACAAAGGAAGCCGGGCCGG 34 bp deleted → frameshift
73.2 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCC------------------------------------------GGGCCGG 42 bp deleted → no frameshift
70.5 CACTTCCGGCGCGCCGAGTCCTTAG-----------------------------ATTGGGGACAAAGGAAGCCGGGCCGG 29 bp deleted → frameshift
69.6 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGGGGCG-----------------------------------GGCCGG 35 bp deleted → frameshift
69.6 CACTTCCGGCGCGCCGAGTCCTTAGG-----------------------------------ACAAAGGAAGCCGGGCCGG 35 bp deleted → frameshift
62.8 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGGGGCGC-------------------------------------CGG 37 bp deleted → frameshift
62.8 CACTTCCGGCGCGCC-------------------------------------AGATTGGGGACAAAGGAAGCCGGGCCGG 37 bp deleted → frameshift
62.8 CACTTCCG-------------------------------------CGCGCCCAGATTGGGGACAAAGGAAGCCGGGCCGG 37 bp deleted → frameshift
61.0 CACTTCCGGCGCGCCGAGTCCTTAGG------------------------------------------AAGCCGGGCCGG 42 bp deleted → no frameshift
60.6 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCA--------------------------------AAGGAAGCCGGGCCGG 32 bp deleted → frameshift
60.0 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGGGG--------------------------------------GCCGG 38 bp deleted → frameshift
57.0 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCC-----------------------------------------------GG 47 bp deleted → frameshift
56.8 CACTTCCG---------------------------------------CGCCCAGATTGGGGACAAAGGAAGCCGGGCCGG 39 bp deleted → no frameshift
54.0 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGGGGCG----------------------------------------G 40 bp deleted → frameshift
54.0 CACTTCCGGC----------------------------------------CCAGATTGGGGACAAAGGAAGCCGGGCCGG 40 bp deleted → frameshift
51.6 CACTTCCG-----------------------------------------CCCAGATTGGGGACAAAGGAAGCCGGGCCGG 41 bp deleted → frameshift
49.5 CACTTCCGGCGCGCCGAG------------------------------------ATTGGGGACAAAGGAAGCCGGGCCGG 36 bp deleted → no frameshift
48.8 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGG------------------------------------------CCGG 42 bp deleted → no frameshift
46.4 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGGGG------------------------------------------- 43 bp deleted → frameshift
45.0 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAG--------------------------------------CCGGGCCGG 38 bp deleted → frameshift
45.0 CACTTCCGGCGCGCCGA--------------------------------------TTGGGGACAAAGGAAGCCGGGCCGG 38 bp deleted → frameshift
44.4 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGGG-------------------------------------------- 44 bp deleted → frameshift
44.4 CACTTCC--------------------------------------------CAGATTGGGGACAAAGGAAGCCGGGCCGG 44 bp deleted → frameshift
44.0 CACTTCCGGCGCGCCG----------------------------------------------------------GGCCGG 58 bp deleted → frameshift
42.0 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGGG--------------------------------------------- 45 bp deleted → no frameshift
42.0 CACTTCC---------------------------------------------AGATTGGGGACAAAGGAAGCCGGGCCGG 45 bp deleted → no frameshift
40.0 CACTTCCGGCGCGCCGAGTCCTTAGGCCGCCAGG---------------------------------------------- 46 bp deleted → frameshift
36.6 CACTTCCGGCGCGCCGAGTCCTT----------------------------------GGGGACAAAGGAAGCCGGGCCGG 34 bp deleted → frameshift
34.4 CACTTCCGGCGCGCCGAGTCCTTAGG-------------------------------------------------GCCGG 49 bp deleted → frameshift
34.4 CACTTCCGGCGCGCCG---------------------------------------------------------------G 63 bp deleted → no frameshift
32.8 CACTTCCGG--------------------------------------------------GGACAAAGGAAGCCGGGCCGG 50 bp deleted → frameshift
31.5 CACTTCCGGCGCGCCGA---------------------------------------------CAAAGGAAGCCGGGCCGG 45 bp deleted → no frameshift
31.2 CACTTCCGG---------------------------------------------------GACAAAGGAAGCCGGGCCGG 51 bp deleted → no frameshift
30.0 CACTTCCGGCGCGCCGAGTCCTTAG----------------------------------------------CCGGGCCGG 46 bp deleted → frameshift
29.6 CACTTCCGGCGCGCCGAGTCC----------------------------------------------------GGGCCGG 52 bp deleted → frameshift
29.6 CACTTCCGG----------------------------------------------------ACAAAGGAAGCCGGGCCGG 52 bp deleted → frameshift
29.6 CACTTCCGG------------------------------------------------------------------GCCGG 66 bp deleted → no frameshift
26.8 CACTTCCGGCGCGCCGAGTCCTTAGG------------------------------------------------------ 54 bp deleted → no frameshift
25.8 CACTTCCGGCGCGCCGAG-------------------------------------------------GAAGCCGGGCCGG 49 bp deleted → frameshift
23.4 CA---------------------------------------------------GATTGGGGACAAAGGAAGCCGGGCCGG 51 bp deleted → no frameshift
23.2 CACTTCCGGCGCGCCGAGTCC---------------------------------------------------------GG 57 bp deleted → no frameshift
23.2 CACTTCCGG----------------------------------------------------------------------- 71 bp deleted → frameshift
22.2 CACTTCCGGCGCGCCGA----------------------------------------------------AGCCGGGCCGG 52 bp deleted → frameshift
21.3 CACTTCCGGCGCGCCGAG-----------------------------------------------------CCGGGCCGG 53 bp deleted → frameshift
21.0 CACTTCCGGC-------------------------------------------------------------------CGG 67 bp deleted → frameshift
20.8 CACTTCCGG-----------------------------------------------------------AAGCCGGGCCGG 59 bp deleted → frameshift
20.0 CACTTCCGGCGC------------------------------------------------------------CGGGCCGG 60 bp deleted → no frameshift
18.8 CACTTCCGGCGCG-------------------------------------------------------------GGCCGG 61 bp deleted → frameshift
18.0 CACTTCCGGC--------------------------------------------------------------CGGGCCGG 62 bp deleted → frameshift
17.2 CACTTCCGGCG---------------------------------------------------------------GGCCGG 63 bp deleted → no frameshift
15.6 CACTTCCGGCGC-----------------------------------------------------------------CGG 65 bp deleted → frameshift
15.0 CAC------------------------------------------------------------AAAGGAAGCCGGGCCGG 60 bp deleted → no frameshift
14.8 CACTTCCGGCGCG------------------------------------------------------------------G 66 bp deleted → no frameshift
14.8 CACTT----------------------------------------------------GGGGACAAAGGAAGCCGGGCCGG 52 bp deleted → frameshift
13.5 CA--------------------------------------------------------------AAGGAAGCCGGGCCGG 62 bp deleted → frameshift
13.2 CACTTCCGGCG--------------------------------------------------------------------G 68 bp deleted → frameshift
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CRISPR/Cas9 Guide Designer for chordate vertebrate ecdysozoans lophotrochozoans protostomes spongi corals plants butterflies metazoans genomes fruitflies insects nematodes mammals.