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Micro-homology scoring of potential deletions

Guide: GGCCGTCTTCCCCTCCATCG TGG

The following table lists possible deletions. Each sequence below represents the context around the guide's target, with deleted nucleotides shown as "-". They are ranked by the "micro-homology score". This score is correlated to the likelihood of finding a particular deletion, as predicted by the method of Bae et al. 2014.

Bae-Score Sequence Effect
GCGGGCGACGATGCCCCCCGGGCCGTCTTCCCCTCCATCGTGGGGCGCCCCAGGCACCAGGTAGGGGAGCTGGCTGGGTG (Wild-type sequence)
325.6 GCGGGCGACGATGCCCCCCGGGCCGTCTTCCCC------------------AGGCACCAGGTAGGGGAGCTGGCTGGGTG 18 bp deleted → no frameshift
282.0 GCGGGCGACGATGCCCCCCGGGCCGTCTTCCCCTCCATCG-------CCCCAGGCACCAGGTAGGGGAGCTGGCTGGGTG 7 bp deleted → frameshift
256.2 GCGGGCGACGATGCCCCCCGGGCCGTCTTCCCC-----------------CAGGCACCAGGTAGGGGAGCTGGCTGGGTG 17 bp deleted → frameshift
253.6 GCGGGCGACGATGCCCCCCGGGC-----------------------GCCCCAGGCACCAGGTAGGGGAGCTGGCTGGGTG 23 bp deleted → frameshift
236.0 GCGGGCGACGATGCCCCCCGGGCCGTCTTCCCCTCCA---------------GGCACCAGGTAGGGGAGCTGGCTGGGTG 15 bp deleted → no frameshift
232.2 GCGGGCGACGATGCCCCCCGGGCCGTCTTCCC-------------------AGGCACCAGGTAGGGGAGCTGGCTGGGTG 19 bp deleted → frameshift
208.8 GCGGGCGACGATGCCCCCCGGGCCGTCTTCCCCTCC-------------CCAGGCACCAGGTAGGGGAGCTGGCTGGGTG 13 bp deleted → frameshift
199.8 GCGGGCGACGATGCCCCCCGGG----------------------GCGCCCCAGGCACCAGGTAGGGGAGCTGGCTGGGTG 22 bp deleted → frameshift
198.8 GCGGGCGACGATGCCCCCCGGGCCGTCTTCCCCTCC--------------CAGGCACCAGGTAGGGGAGCTGGCTGGGTG 14 bp deleted → frameshift
183.0 GCGGGCGACGATGCCCC----------------------------------AGGCACCAGGTAGGGGAGCTGGCTGGGTG 34 bp deleted → frameshift
179.6 GCGGGCGACGATGCCCCCCGGGCCGTCTTCCCC----------------CCAGGCACCAGGTAGGGGAGCTGGCTGGGTG 16 bp deleted → frameshift
172.2 GCGGGCGACGATGCCCCCCGGGCC-------------------------CCAGGCACCAGGTAGGGGAGCTGGCTGGGTG 25 bp deleted → frameshift
166.5 GCGGGCGACGATGCCCCCCGGGCCGTCTTCCCCTCCA----------------------GGTAGGGGAGCTGGCTGGGTG 22 bp deleted → frameshift
161.6 GCGGGCGACGATGCCCCCC--------------------------------AGGCACCAGGTAGGGGAGCTGGCTGGGTG 32 bp deleted → frameshift
153.6 GCGGGCGACGATGCCCCC---------------------------------AGGCACCAGGTAGGGGAGCTGGCTGGGTG 33 bp deleted → no frameshift
147.2 GCGGGCGACGATGCCCCCCGGGCCGTCTTCC--------------------AGGCACCAGGTAGGGGAGCTGGCTGGGTG 20 bp deleted → frameshift
140.0 GCGGGCGACGATGCCCCCCGGG---------------------GGCGCCCCAGGCACCAGGTAGGGGAGCTGGCTGGGTG 21 bp deleted → no frameshift
135.0 GCGGGCG----------------------------------------CCCCAGGCACCAGGTAGGGGAGCTGGCTGGGTG 40 bp deleted → frameshift
133.2 GCGGGCGACGATGCCCCCCGGGCCG----------------------CCCCAGGCACCAGGTAGGGGAGCTGGCTGGGTG 22 bp deleted → frameshift
127.2 GCGGGCGACGATGCCCCCC-------------------------------CAGGCACCAGGTAGGGGAGCTGGCTGGGTG 31 bp deleted → frameshift
121.2 GCGGGCGACGATGCCCCCCGGGC--------------------------------ACCAGGTAGGGGAGCTGGCTGGGTG 32 bp deleted → frameshift
120.4 GCGGGCGACGATGCCCCCCGG------------------------CGCCCCAGGCACCAGGTAGGGGAGCTGGCTGGGTG 24 bp deleted → no frameshift
116.1 GCGGGCGACGATGCCCCCCGGGCCGTCTTCCCCTCCA-------------------CCAGGTAGGGGAGCTGGCTGGGTG 19 bp deleted → frameshift
114.8 GCGGGCGACGATGCCCCCCGGGCCGTCTTCCCC-------------------------AGGTAGGGGAGCTGGCTGGGTG 25 bp deleted → frameshift
109.2 GCGGGCGACGATGCCCCCCGGGCCGTCTTCCC--------------------------AGGTAGGGGAGCTGGCTGGGTG 26 bp deleted → frameshift
109.2 GCGGGCGACGATGCCCCCCGGGCC--------------------------CAGGCACCAGGTAGGGGAGCTGGCTGGGTG 26 bp deleted → frameshift
104.4 GCGGGCGACGATGCCC-----------------------------------AGGCACCAGGTAGGGGAGCTGGCTGGGTG 35 bp deleted → frameshift
103.6 GCGGGCGACGATGCCCCCCGGGCCGTCTTCC---------------------------AGGTAGGGGAGCTGGCTGGGTG 27 bp deleted → no frameshift
103.6 GCGGGCGACGATGCCCCCCGGGCC---------------------------AGGCACCAGGTAGGGGAGCTGGCTGGGTG 27 bp deleted → no frameshift
103.6 GCGGGCGACGATGCCCCCCG---------------------------CCCCAGGCACCAGGTAGGGGAGCTGGCTGGGTG 27 bp deleted → no frameshift
89.2 GCGGGCGACGATGCCCCCC------------------------------CCAGGCACCAGGTAGGGGAGCTGGCTGGGTG 30 bp deleted → no frameshift
85.2 GCGGG---------------------------------------GCGCCCCAGGCACCAGGTAGGGGAGCTGGCTGGGTG 39 bp deleted → no frameshift
80.8 GCGGGCGACGATGC--------------------------------GCCCCAGGCACCAGGTAGGGGAGCTGGCTGGGTG 32 bp deleted → frameshift
76.8 GCGGGCGACGATGCCCCCCGG---------------------------------CACCAGGTAGGGGAGCTGGCTGGGTG 33 bp deleted → no frameshift
73.2 GCGGGCGACGATGCCCCCCGGGCC----------------------------------AGGTAGGGGAGCTGGCTGGGTG 34 bp deleted → frameshift
70.5 GCGGGCGACGATG-----------------------------GGGCGCCCCAGGCACCAGGTAGGGGAGCTGGCTGGGTG 29 bp deleted → frameshift
66.6 GCGGGCGACGATGCCCCCCGGG--------------------------------------------GAGCTGGCTGGGTG 44 bp deleted → frameshift
66.6 GCG--------------------------------------------CCCCAGGCACCAGGTAGGGGAGCTGGCTGGGTG 44 bp deleted → frameshift
66.0 GCGGGCGACGATGCC------------------------------------AGGCACCAGGTAGGGGAGCTGGCTGGGTG 36 bp deleted → no frameshift
63.0 GCGGGCGACGATGCCCCCCGGG---------------------------------------------AGCTGGCTGGGTG 45 bp deleted → no frameshift
62.8 GCGGGCGACG-------------------------------------CCCCAGGCACCAGGTAGGGGAGCTGGCTGGGTG 37 bp deleted → frameshift
60.0 GCGGG--------------------------------------GGCGCCCCAGGCACCAGGTAGGGGAGCTGGCTGGGTG 38 bp deleted → frameshift
56.8 GCGGGCGACGATGCCCCCCGGG---------------------------------------TAGGGGAGCTGGCTGGGTG 39 bp deleted → no frameshift
56.8 GCGGGCGACGATGCCCCCC---------------------------------------AGGTAGGGGAGCTGGCTGGGTG 39 bp deleted → no frameshift
54.0 GCGGGCGACGATGCCCCCCGG----------------------------------------TAGGGGAGCTGGCTGGGTG 40 bp deleted → frameshift
54.0 GCGGGCGACGATGCCCCC----------------------------------------AGGTAGGGGAGCTGGCTGGGTG 40 bp deleted → frameshift
51.6 GCGGGCGACGATGCCCC-----------------------------------------AGGTAGGGGAGCTGGCTGGGTG 41 bp deleted → frameshift
51.6 GCGGGCGACGATGC-----------------------------------------ACCAGGTAGGGGAGCTGGCTGGGTG 41 bp deleted → frameshift
51.6 GCGG-----------------------------------------CGCCCCAGGCACCAGGTAGGGGAGCTGGCTGGGTG 41 bp deleted → frameshift
51.6 GCGGGC-------------------------------------------------ACCAGGTAGGGGAGCTGGCTGGGTG 49 bp deleted → frameshift
49.5 GCGGGCGACGATGCCCCCCGGGCCGT------------------------------------AGGGGAGCTGGCTGGGTG 36 bp deleted → no frameshift
48.8 GCGGGCGACGATGCCC------------------------------------------AGGTAGGGGAGCTGGCTGGGTG 42 bp deleted → no frameshift
48.8 GCGGGC------------------------------------------CCCAGGCACCAGGTAGGGGAGCTGGCTGGGTG 42 bp deleted → no frameshift
47.1 GCGGGCGACGATGCCCCCCGGGCCGTCTTCCCCT-------------------------------------GGCTGGGTG 37 bp deleted → frameshift
46.8 GCGGGCGACGATGCCCCCCGGGC---------------------------------------------------TGGGTG 51 bp deleted → no frameshift
46.4 GCGGGCGACGATGCCCCCCGGG-------------------------------------------GGAGCTGGCTGGGTG 43 bp deleted → frameshift
46.4 GCGGGCGACGATGCC-------------------------------------------AGGTAGGGGAGCTGGCTGGGTG 43 bp deleted → frameshift
40.0 GCGGGCGACGATGCCCCCCGG----------------------------------------------AGCTGGCTGGGTG 46 bp deleted → frameshift
40.0 GC----------------------------------------------CCCAGGCACCAGGTAGGGGAGCTGGCTGGGTG 46 bp deleted → frameshift
38.7 GCGGGCGACGATGCCCCCCGGGCCGTCTTCCCCT-----------------------------------------GGGTG 41 bp deleted → frameshift
38.0 GCGGGCGACGATGCCCCCCGGGC-----------------------------------------------TGGCTGGGTG 47 bp deleted → frameshift
36.6 GCGGGCGACGATGCCCCCCGGG--------------------------------------------------------TG 56 bp deleted → frameshift
34.8 GCGGGCGACGATGCCCCCCGGGCCGTCT-------------------------------------------GGCTGGGTG 43 bp deleted → frameshift
32.8 GCGG--------------------------------------------------CACCAGGTAGGGGAGCTGGCTGGGTG 50 bp deleted → frameshift
29.6 GCGGGCGACGATGCCCCCCGG----------------------------------------------------CTGGGTG 52 bp deleted → frameshift
28.5 GCGGGCGACGATGCCCCCCGGGCCGTCT-----------------------------------------------GGGTG 47 bp deleted → frameshift
28.4 GC-----------------------------------------------------ACCAGGTAGGGGAGCTGGCTGGGTG 53 bp deleted → frameshift
28.2 GCGGG-------------------------------------------------------------GAGCTGGCTGGGTG 61 bp deleted → frameshift
27.3 GCGGGCGAC------------------------------------------------CAGGTAGGGGAGCTGGCTGGGTG 48 bp deleted → no frameshift
27.0 GCGGG--------------------------------------------------------------AGCTGGCTGGGTG 62 bp deleted → frameshift
25.6 GCGGGCGACGATGCCCCCCGGG-------------------------------------------------------GTG 55 bp deleted → frameshift
24.4 GCGGGCGACGATGC--------------------------------------------------------TGGCTGGGTG 56 bp deleted → frameshift
24.4 GCGGG--------------------------------------------------------TAGGGGAGCTGGCTGGGTG 56 bp deleted → frameshift
23.2 GCGGGCGACGATGCCCCCCGG---------------------------------------------------------TG 57 bp deleted → no frameshift
23.2 GCGG---------------------------------------------------------TAGGGGAGCTGGCTGGGTG 57 bp deleted → no frameshift
21.3 GCGGGCGACGATGCCCCCCGGGCCGT-----------------------------------------------------G 53 bp deleted → frameshift
20.0 GCGGGCGACGATGC------------------------------------------------------------TGGGTG 60 bp deleted → no frameshift
20.0 GCGGG------------------------------------------------------------GGAGCTGGCTGGGTG 60 bp deleted → no frameshift
19.8 GCGGGC--------------------------------------------------------------------TGGGTG 68 bp deleted → frameshift
17.4 GCGGGCGACGA---------------------------------------------------------GCTGGCTGGGTG 57 bp deleted → no frameshift
17.2 GCGG---------------------------------------------------------------AGCTGGCTGGGTG 63 bp deleted → no frameshift
16.4 GCGGGC----------------------------------------------------------------TGGCTGGGTG 64 bp deleted → frameshift
15.6 GCGGGCGACGATG-----------------------------------------------------------GCTGGGTG 59 bp deleted → frameshift
15.6 GCGGG-------------------------------------------------------------------------TG 73 bp deleted → frameshift
15.0 GCGGGCGA------------------------------------------------------------GCTGGCTGGGTG 60 bp deleted → no frameshift
13.2 GC--------------------------------------------------------------------TGGCTGGGTG 68 bp deleted → frameshift
12.9 GCGGGCGACGATG---------------------------------------------------------------GGTG 63 bp deleted → no frameshift
12.8 GCGG---------------------------------------------------------------------CTGGGTG 69 bp deleted → no frameshift
10.8 GCGGG------------------------------------------------------------------------GTG 72 bp deleted → no frameshift
10.8 GC------------------------------------------------------------------------TGGGTG 72 bp deleted → no frameshift
10.5 GCGGGCGACGATG------------------------------------------------------------------- 67 bp deleted → frameshift
10.0 GCGG--------------------------------------------------------------------------TG 74 bp deleted → frameshift
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CRISPR/Cas9 Guide Designer for chordate vertebrate ecdysozoans lophotrochozoans protostomes spongi corals plants butterflies metazoans genomes fruitflies insects nematodes mammals.