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Micro-homology scoring of potential deletions

Guide: ATGGAGGGGAAGACGGCCCG GGG

The following table lists possible deletions. Each sequence below represents the context around the guide's target, with deleted nucleotides shown as "-". They are ranked by the "micro-homology score". This score is correlated to the likelihood of finding a particular deletion, as predicted by the method of Bae et al. 2014.

Bae-Score Sequence Effect
GGTGCCTGGGGCGCCCCACGATGGAGGGGAAGACGGCCCGGGGGGCATCGTCGCCCGCGAAGCCGGCCTTGCACATGCCG (Wild-type sequence)
427.0 GGTGCCTGGGGCGCCCCACGATGGAGGGGAAGACGGCCCG-----------------CGAAGCCGGCCTTGCACATGCCG 17 bp deleted → frameshift
382.8 GGTGCCTGGGGCGCCCCACGATGGAGGGGAAGACGGC---------ATCGTCGCCCGCGAAGCCGGCCTTGCACATGCCG 9 bp deleted → no frameshift
377.6 GGTGCCTGGGGCGCCCCACGATGGAGGGG---------------GCATCGTCGCCCGCGAAGCCGGCCTTGCACATGCCG 15 bp deleted → no frameshift
359.2 GGTGCCTGGGGCGCCCCACGATGGAGGGG----------------CATCGTCGCCCGCGAAGCCGGCCTTGCACATGCCG 16 bp deleted → frameshift
298.2 GGTGCCTGGGGCGCCCCACGATGGAGGGG--------------GGCATCGTCGCCCGCGAAGCCGGCCTTGCACATGCCG 14 bp deleted → frameshift
296.4 GGTGCCTGGGGCGCCCCACGATGGAGGGGAAGACGG------GGGCATCGTCGCCCGCGAAGCCGGCCTTGCACATGCCG 6 bp deleted → no frameshift
282.0 GGTGCCTGGGGCGCCCCACGATGGAGGGGAAGACGG-------GGCATCGTCGCCCGCGAAGCCGGCCTTGCACATGCCG 7 bp deleted → frameshift
268.0 GGTGCCTGGGGCGCCCCACGATGGAGGGGAAGACGG--------GCATCGTCGCCCGCGAAGCCGGCCTTGCACATGCCG 8 bp deleted → frameshift
256.2 GGTGCCTGGGGCGCCCCACGATGGAGGG-----------------CATCGTCGCCCGCGAAGCCGGCCTTGCACATGCCG 17 bp deleted → frameshift
242.8 GGTGCCTGGGGCGCCCCACGATGGAGGGGAAGACGGCCCG----------TCGCCCGCGAAGCCGGCCTTGCACATGCCG 10 bp deleted → frameshift
223.0 GGTGCCTGGGGCGCCCCACGATGGAGGGGAAGACGGCC------------------------------TTGCACATGCCG 30 bp deleted → no frameshift
208.8 GGTGCCTGGGGCGCCCCACGATGGAGGGGAAGACGGCCCG-------------CCCGCGAAGCCGGCCTTGCACATGCCG 13 bp deleted → frameshift
208.8 GGTGCCTGGGGCGCCCCACGATGGAGGGG-------------GGGCATCGTCGCCCGCGAAGCCGGCCTTGCACATGCCG 13 bp deleted → frameshift
188.8 GGTGCCTGGGGCGCCCCACGATGGAGGGGAAGACG---------------TCGCCCGCGAAGCCGGCCTTGCACATGCCG 15 bp deleted → no frameshift
183.0 GGTGCCTGGGGC----------------------------------ATCGTCGCCCGCGAAGCCGGCCTTGCACATGCCG 34 bp deleted → frameshift
179.6 GGTGCCTGGGGCGCCCCACGATGGAGGGGAAGACGGCCC----------------CGCGAAGCCGGCCTTGCACATGCCG 16 bp deleted → frameshift
172.2 GGTGCCTGGGGCGCCCCACGATGGAGGGGAAGACGGCCCG-------------------------GCCTTGCACATGCCG 25 bp deleted → frameshift
163.8 GGTGCCTGGGGCGCCCCACGATGGAGGGGAAGACGGCC--------------------------GGCCTTGCACATGCCG 26 bp deleted → frameshift
162.8 GGTGCCTGGGGCGCCCCACGATGGAGGGGAAGACGGCC------------------GCGAAGCCGGCCTTGCACATGCCG 18 bp deleted → no frameshift
162.8 GGTGCCTGGGGCGCCCCACGATGGAGGGGAAGACG------------------CCCGCGAAGCCGGCCTTGCACATGCCG 18 bp deleted → no frameshift
162.8 GGTGCCTGGGGCGCCCCACGATGGAGG------------------CATCGTCGCCCGCGAAGCCGGCCTTGCACATGCCG 18 bp deleted → no frameshift
162.8 GGTGCCTGGGGCGCCCCACGATGG------------------GGGCATCGTCGCCCGCGAAGCCGGCCTTGCACATGCCG 18 bp deleted → no frameshift
154.8 GGTGCCTGGGGCGCCCCACGATGGAGGGGAAGACGGCCCG-------------------AAGCCGGCCTTGCACATGCCG 19 bp deleted → frameshift
154.8 GGTGCCTGGGGCGCCCCACGATGG-------------------GGCATCGTCGCCCGCGAAGCCGGCCTTGCACATGCCG 19 bp deleted → frameshift
153.6 GGTGCCTGGGG---------------------------------GCATCGTCGCCCGCGAAGCCGGCCTTGCACATGCCG 33 bp deleted → no frameshift
147.2 GGTGCCTGGGGCGCCCCACGATGG--------------------GCATCGTCGCCCGCGAAGCCGGCCTTGCACATGCCG 20 bp deleted → frameshift
140.0 GGTGCCTGGGGCGCCCCACGATGGAGGGGAAGACGGC---------------------GAAGCCGGCCTTGCACATGCCG 21 bp deleted → no frameshift
140.0 GGTGCCTGGGGCGCCCCACGATGG---------------------CATCGTCGCCCGCGAAGCCGGCCTTGCACATGCCG 21 bp deleted → no frameshift
135.0 GGTGCCTGGGGCGCCC----------------------------------------GCGAAGCCGGCCTTGCACATGCCG 40 bp deleted → frameshift
133.8 GGTGCCTGGGGCGCCCCACGATGGAGGGGAAG------------------------------CCGGCCTTGCACATGCCG 30 bp deleted → no frameshift
133.2 GGTGCCTGGGGCGCCCCACGATGGAGGGGAAGACG----------------------CGAAGCCGGCCTTGCACATGCCG 22 bp deleted → frameshift
121.2 GGTGCCTGGGG--------------------------------GGCATCGTCGCCCGCGAAGCCGGCCTTGCACATGCCG 32 bp deleted → frameshift
120.4 GGTGCCTGGGGCGCCCCACGATGGAGGGGAAGACG------------------------AAGCCGGCCTTGCACATGCCG 24 bp deleted → no frameshift
104.4 GGTGCCTGGG-----------------------------------CATCGTCGCCCGCGAAGCCGGCCTTGCACATGCCG 35 bp deleted → frameshift
94.0 GGTGCCTGGGGCGCCCCACGATGGAGGGGAAGACGGCCC-----------------------------TTGCACATGCCG 29 bp deleted → frameshift
89.2 GGTGCCTGGGGCGCCCCACG------------------------------TCGCCCGCGAAGCCGGCCTTGCACATGCCG 30 bp deleted → no frameshift
85.2 GGTGCCTGGGGCGCCCC---------------------------------------GCGAAGCCGGCCTTGCACATGCCG 39 bp deleted → no frameshift
84.8 GGTGCCTGGGG-------------------------------GGGCATCGTCGCCCGCGAAGCCGGCCTTGCACATGCCG 31 bp deleted → frameshift
81.0 GGTGCCTGGGGCGCCCCACGATGGAGGGGAAGACGGCCCG---------------------------------------- 40 bp deleted → frameshift
80.8 GGTGCCTGGGGCGC--------------------------------ATCGTCGCCCGCGAAGCCGGCCTTGCACATGCCG 32 bp deleted → frameshift
77.7 GGTGCCTGGGGCGCCCCACGATGGAGGGGAAGA---------------------------AGCCGGCCTTGCACATGCCG 27 bp deleted → no frameshift
77.4 GGTGCCTGGGGCGCCCCACGATGGAGGGGAAGACGGCC-----------------------------------------G 41 bp deleted → frameshift
76.8 GGTGCCTGGGGCGCCCCACG---------------------------------CCCGCGAAGCCGGCCTTGCACATGCCG 33 bp deleted → no frameshift
71.0 GGTGCCTGGGGCGCCCCACGA---------------------------------------AGCCGGCCTTGCACATGCCG 39 bp deleted → no frameshift
70.5 GGTGCCTGGGGCGCCCCA-----------------------------TCGTCGCCCGCGAAGCCGGCCTTGCACATGCCG 29 bp deleted → frameshift
69.6 GGTGCCTGGGGCGCCCCACGATGGAGGGGAAGACGGC-----------------------------------ACATGCCG 35 bp deleted → frameshift
66.6 GGTGCCTGGGGCGC--------------------------------------------GAAGCCGGCCTTGCACATGCCG 44 bp deleted → frameshift
66.0 GGTGCCTGG------------------------------------CATCGTCGCCCGCGAAGCCGGCCTTGCACATGCCG 36 bp deleted → no frameshift
62.8 GGTGCCTGGGGCGCCCCACGATGGAGGGG-------------------------------------CCTTGCACATGCCG 37 bp deleted → frameshift
62.8 GGTGCCTGGGGCGCCCCACG-------------------------------------CGAAGCCGGCCTTGCACATGCCG 37 bp deleted → frameshift
62.8 GGTGCCTGGGGCG-------------------------------------TCGCCCGCGAAGCCGGCCTTGCACATGCCG 37 bp deleted → frameshift
60.0 GGTGCCTGGGGCGCCCCACGATGGAGGG--------------------------------------CCTTGCACATGCCG 38 bp deleted → frameshift
60.0 GGTGCCTGGGGCGCCCC--------------------------------------CGCGAAGCCGGCCTTGCACATGCCG 38 bp deleted → frameshift
60.0 GGTGCCTGGGGCG----------------------------------------------AAGCCGGCCTTGCACATGCCG 46 bp deleted → frameshift
56.8 GGTGCCTGGGGCGCCCCACGATGGAGG---------------------------------------CCTTGCACATGCCG 39 bp deleted → no frameshift
54.6 GGTGCCTGGGGCGCCCCACGAT--------------------------CGTCGCCCGCGAAGCCGGCCTTGCACATGCCG 26 bp deleted → frameshift
54.0 GG----------------------------------------GGGCATCGTCGCCCGCGAAGCCGGCCTTGCACATGCCG 40 bp deleted → frameshift
52.2 GGTGCCTGGGGCGCCCCACGATGGA-----------------------------------AGCCGGCCTTGCACATGCCG 35 bp deleted → frameshift
51.6 GGTGCCTGGGGCGCC-----------------------------------------GCGAAGCCGGCCTTGCACATGCCG 41 bp deleted → frameshift
51.6 GGTGC-----------------------------------------ATCGTCGCCCGCGAAGCCGGCCTTGCACATGCCG 41 bp deleted → frameshift
51.6 GG-----------------------------------------GGCATCGTCGCCCGCGAAGCCGGCCTTGCACATGCCG 41 bp deleted → frameshift
51.6 GGTGCCTGGGGCGCC-------------------------------------------------GGCCTTGCACATGCCG 49 bp deleted → frameshift
51.6 GGTGCC-------------------------------------------------CGCGAAGCCGGCCTTGCACATGCCG 49 bp deleted → frameshift
49.5 GGTGCCTGGGGCGCCCCACGATGGAG------------------------------------CCGGCCTTGCACATGCCG 36 bp deleted → no frameshift
48.8 GGTGCCTGGGGCGCCCCACGATGG------------------------------------------CCTTGCACATGCCG 42 bp deleted → no frameshift
48.8 GGTGCCTGGGGC------------------------------------------CCGCGAAGCCGGCCTTGCACATGCCG 42 bp deleted → no frameshift
48.8 GG------------------------------------------GCATCGTCGCCCGCGAAGCCGGCCTTGCACATGCCG 42 bp deleted → no frameshift
46.4 GG-------------------------------------------CATCGTCGCCCGCGAAGCCGGCCTTGCACATGCCG 43 bp deleted → frameshift
42.6 GGTGCCTGGGGCGCC-----------------------------------------------------TTGCACATGCCG 53 bp deleted → frameshift
42.0 GGTGCCTGGGGCGCCCCACGATGGAGGGGAAGACG--------------------------------------------- 45 bp deleted → no frameshift
42.0 GGTGCCTGGGGCGCCCCACG---------------------------------------------GCCTTGCACATGCCG 45 bp deleted → no frameshift
40.5 GGTGCCTGGGGCGCCCCACGATGGAGGGGAAGAC----------------------------------------ATGCCG 40 bp deleted → frameshift
38.4 GGTGCCTGGGGC-------------------------------------------------------CTTGCACATGCCG 55 bp deleted → frameshift
38.0 GGTGCCTGGGGCGCCCC-----------------------------------------------GGCCTTGCACATGCCG 47 bp deleted → frameshift
36.4 GGTGCCTGGGGCGCCC------------------------------------------------GGCCTTGCACATGCCG 48 bp deleted → no frameshift
33.0 GGTGCC----------------------------------------------------------GGCCTTGCACATGCCG 58 bp deleted → frameshift
32.8 GGTGCC--------------------------------------------------GCGAAGCCGGCCTTGCACATGCCG 50 bp deleted → frameshift
32.0 GGTGCCTGGGGCGCCCCAC-------------------------------------------------------ATGCCG 55 bp deleted → frameshift
31.5 GGTGCCT--------------------------------------------------------------TGCACATGCCG 62 bp deleted → frameshift
31.2 GGTGCCTGGGGCGCCCC---------------------------------------------------TTGCACATGCCG 51 bp deleted → no frameshift
31.2 GGTGCCTGGGGC---------------------------------------------------CGGCCTTGCACATGCCG 51 bp deleted → no frameshift
29.6 GGTGCCTGGGGCGCCC----------------------------------------------------TTGCACATGCCG 52 bp deleted → frameshift
29.6 GGTGCCTGGGGCG----------------------------------------------------GCCTTGCACATGCCG 52 bp deleted → frameshift
28.4 GGTGC-----------------------------------------------------GAAGCCGGCCTTGCACATGCCG 53 bp deleted → frameshift
27.3 GGTGCCTGGGGCGCCCCACGATG------------------------------------------------CACATGCCG 48 bp deleted → no frameshift
27.3 GGT------------------------------------------------CGCCCGCGAAGCCGGCCTTGCACATGCCG 48 bp deleted → no frameshift
26.8 GGTGCCTGGGGCGCCCCACGATG------------------------------------------------------CCG 54 bp deleted → no frameshift
24.6 GGTGCCTGGGGCGCC----------------------------------------------------------------G 64 bp deleted → frameshift
24.4 GGTGCCTGGG--------------------------------------------------------CCTTGCACATGCCG 56 bp deleted → frameshift
23.2 GGTGCCTGG---------------------------------------------------------CCTTGCACATGCCG 57 bp deleted → no frameshift
22.0 GGTGCCTGGGGCGC----------------------------------------------------------ACATGCCG 58 bp deleted → frameshift
20.0 GGTGCCTGGGGCGCCCCACG------------------------------------------------------------ 60 bp deleted → no frameshift
20.0 GGTGCCTGGGGC------------------------------------------------------------ACATGCCG 60 bp deleted → no frameshift
18.2 GGTGCC-------------------------------------------------------------------------G 73 bp deleted → frameshift
18.0 GGTGCCTGGGGCGCCCC--------------------------------------------------------------G 62 bp deleted → frameshift
17.5 GGTGC-------------------------------------------------------------------ACATGCCG 67 bp deleted → frameshift
17.4 GGTGCCTGGGGCGCCCCA---------------------------------------------------------TGCCG 57 bp deleted → no frameshift
17.2 GGTGCCTGGGGCGCCC---------------------------------------------------------------G 63 bp deleted → no frameshift
16.4 GG----------------------------------------------------------------CCTTGCACATGCCG 64 bp deleted → frameshift
14.8 GGTGCCTGGGGC------------------------------------------------------------------CG 66 bp deleted → no frameshift
14.0 GGTGCCTGGGGCG------------------------------------------------------------------- 67 bp deleted → frameshift
12.9 GGTGCCTG---------------------------------------------------------------CACATGCCG 63 bp deleted → no frameshift
9.6 GGTGCCTG---------------------------------------------------------------------CCG 69 bp deleted → no frameshift
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CRISPR/Cas9 Guide Designer for chordate vertebrate ecdysozoans lophotrochozoans protostomes spongi corals plants butterflies metazoans genomes fruitflies insects nematodes mammals.