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The following table lists possible deletions. Each sequence below represents the context around the guide's target, with deleted nucleotides shown as "-". They are ranked by the "micro-homology score". This score is correlated to the likelihood of finding a particular deletion, as predicted by the method of Bae et al. 2014.
Bae-Score | Sequence | Effect |
---|---|---|
CCGGCCTTGCACATGCCGGAGCCGTTGTCGACGACGAGCGCGGCGATATCATCATCCATGGTGAGCTGCGAGAATAGCCG | (Wild-type sequence) | |
467.4 | CCGGCCTTGCACATGCCGGAGCCGTTGTCGACGACGAGCG-----ATATCATCATCCATGGTGAGCTGCGAGAATAGCCG | 5 bp deleted → frameshift |
362.0 | CCGGCCTTGCACATGCCGGAGCCGTTGTCGACGACGAGCG--GCGATATCATCATCCATGGTGAGCTGCGAGAATAGCCG | 2 bp deleted → frameshift |
319.0 | CCGGCCTTGCACATGCCGGAGCCGTTGTCGACGACGA---------TATCATCATCCATGGTGAGCTGCGAGAATAGCCG | 9 bp deleted → no frameshift |
296.4 | CCGGCCTTGCACATGCCGGAGCCGTTGTCGACGACG------GCGATATCATCATCCATGGTGAGCTGCGAGAATAGCCG | 6 bp deleted → no frameshift |
274.5 | CCGGCCTTGCACATGCCGGAGCCGTTGTCGACGA------------TATCATCATCCATGGTGAGCTGCGAGAATAGCCG | 12 bp deleted → no frameshift |
255.2 | CCGGCCTTGCACATGCCGGAGCCGTTGTCGACG---------GCGATATCATCATCCATGGTGAGCTGCGAGAATAGCCG | 9 bp deleted → no frameshift |
236.0 | CCGGCCTTGCACATGCCGGAGCCGTTGTCGA---------------TATCATCATCCATGGTGAGCTGCGAGAATAGCCG | 15 bp deleted → no frameshift |
219.6 | CCGGCCTTGCACATGCCGGAGCCGTTGTCG------------GCGATATCATCATCCATGGTGAGCTGCGAGAATAGCCG | 12 bp deleted → no frameshift |
181.3 | CCGGCCTTGCACATGCCGGAGCCGTTGTCGACGACGAGC---------------------------TGCGAGAATAGCCG | 27 bp deleted → no frameshift |
180.6 | CCGGCCTTGCACATGCCGG------------------------CGATATCATCATCCATGGTGAGCTGCGAGAATAGCCG | 24 bp deleted → no frameshift |
162.8 | CCGGCCTTGCACATGCCGGAGCCG------------------GCGATATCATCATCCATGGTGAGCTGCGAGAATAGCCG | 18 bp deleted → no frameshift |
140.0 | CCGGCCTTGCACATGCCGGAGCCG---------------------ATATCATCATCCATGGTGAGCTGCGAGAATAGCCG | 21 bp deleted → no frameshift |
133.8 | CCGGCCTTGCACATGCCGGAGCCGTTGTCGACGACGAGCG------------------------------AGAATAGCCG | 30 bp deleted → no frameshift |
133.2 | CCGGCCTTGCACATGCCGGAGC----------------------GATATCATCATCCATGGTGAGCTGCGAGAATAGCCG | 22 bp deleted → frameshift |
128.1 | CCGGCCTTGCACATGCCGGAGCCGTTGTCGACGACGAG----------------------------------AATAGCCG | 34 bp deleted → frameshift |
113.6 | CCGGC---------------------------------------GATATCATCATCCATGGTGAGCTGCGAGAATAGCCG | 39 bp deleted → no frameshift |
105.0 | CCGGCCTTGCACATGCCGGAGCCGTTGTC---------------------ATCATCCATGGTGAGCTGCGAGAATAGCCG | 21 bp deleted → no frameshift |
103.6 | CCGGCCTTGCACATGCCG---------------------------ATATCATCATCCATGGTGAGCTGCGAGAATAGCCG | 27 bp deleted → no frameshift |
98.8 | CCGGCCTTGCACATGC----------------------------GATATCATCATCCATGGTGAGCTGCGAGAATAGCCG | 28 bp deleted → frameshift |
90.3 | CCGGCCTTGCACATGCCGGAGCCGTTGTC------------------------ATCCATGGTGAGCTGCGAGAATAGCCG | 24 bp deleted → no frameshift |
81.9 | CCGGCCTTGCACATGCCGGA--------------------------TATCATCATCCATGGTGAGCTGCGAGAATAGCCG | 26 bp deleted → frameshift |
78.5 | CCGGCCTTGCACATGCCGGAGCCGTTGTCGACGA-------------------------------------GAATAGCCG | 37 bp deleted → frameshift |
77.7 | CCGGCCTTGCACATGCCGGAGCCGTTGTC---------------------------CATGGTGAGCTGCGAGAATAGCCG | 27 bp deleted → no frameshift |
77.7 | CCGGCCTTGCACATGCCGGAGC--------------------------------------------TGCGAGAATAGCCG | 44 bp deleted → frameshift |
73.2 | CCGGCCTTGCACATGCCGGAGCC----------------------------------ATGGTGAGCTGCGAGAATAGCCG | 34 bp deleted → frameshift |
73.2 | CCGGCCTTGC----------------------------------GATATCATCATCCATGGTGAGCTGCGAGAATAGCCG | 34 bp deleted → frameshift |
71.0 | CCGGCCTTGCACATGCCGGAGCCGTTGTCGACGACGAGC---------------------------------------CG | 39 bp deleted → no frameshift |
67.5 | CCGGCCTTGCACATGCCGGAGCCGTTGTCGA----------------------------------------GAATAGCCG | 40 bp deleted → frameshift |
66.9 | CCGGCCTTGCACATGCCGGAGCCGTTGTCGACGA------------------------------GCTGCGAGAATAGCCG | 30 bp deleted → no frameshift |
63.0 | CCGGCCTTGCACATG---------------------------------------------GTGAGCTGCGAGAATAGCCG | 45 bp deleted → no frameshift |
60.0 | CCGGCCTTGCACAT--------------------------------------CATCCATGGTGAGCTGCGAGAATAGCCG | 38 bp deleted → frameshift |
57.6 | CCGGCCTTGCACATGCCGGAGCCGTTGTCGA---------------------------------GCTGCGAGAATAGCCG | 33 bp deleted → no frameshift |
57.6 | CCGGCCTTGCACATGCCGGAGCCGTTG---------------------------------GTGAGCTGCGAGAATAGCCG | 33 bp deleted → no frameshift |
54.9 | CCGGCCTTGCACATGCCGGAGCCGTTGT----------------------------------GAGCTGCGAGAATAGCCG | 34 bp deleted → frameshift |
54.9 | CCGGCCTTGCACATGCCGGAGCCG-------------------------------------------------------- | 56 bp deleted → frameshift |
54.0 | CCGGCCTTGCACATGCCGGAGCCGTTGTCGACGACGAGCG---------------------------------------- | 40 bp deleted → frameshift |
54.0 | CCGGCCTTGCACATGCC----------------------------------------ATGGTGAGCTGCGAGAATAGCCG | 40 bp deleted → frameshift |
51.6 | CCGGCCTTGCACAT-----------------------------------------CCATGGTGAGCTGCGAGAATAGCCG | 41 bp deleted → frameshift |
49.5 | CCGGCCTTGCACATGCCGGAGCCGTTGTCGACGACGA------------------------------------ATAGCCG | 36 bp deleted → no frameshift |
49.5 | CCGGCCTTGCACATGCCGGAGCCGTTG------------------------------------AGCTGCGAGAATAGCCG | 36 bp deleted → no frameshift |
48.8 | CCGGCCTTGCACATGCCGG------------------------------------------TGAGCTGCGAGAATAGCCG | 42 bp deleted → no frameshift |
48.8 | CCG------------------------------------------ATATCATCATCCATGGTGAGCTGCGAGAATAGCCG | 42 bp deleted → no frameshift |
47.1 | CCGGCCTTGCACATGCCGGAGCCGT-------------------------------------GAGCTGCGAGAATAGCCG | 37 bp deleted → frameshift |
44.4 | CCGGCCTTGCACATGCCGGAGCCGTTGTCGACGACG-------------------------------------------- | 44 bp deleted → frameshift |
42.6 | CCGGCCTTGCACATGCCGGAGCCGTTGTCGACGA---------------------------------------ATAGCCG | 39 bp deleted → no frameshift |
40.5 | CCGGCCTTGCA----------------------------------------TCATCCATGGTGAGCTGCGAGAATAGCCG | 40 bp deleted → frameshift |
40.0 | CCGGCCTTGCACATGCCGGAGCCG----------------------------------------------AGAATAGCCG | 46 bp deleted → frameshift |
39.0 | CCGGCCTTGCACATGCCGGAG---------------------------------------------------AATAGCCG | 51 bp deleted → no frameshift |
38.7 | CCGGCCTTGCACATGCCGGAGCCGTTG-----------------------------------------CGAGAATAGCCG | 41 bp deleted → frameshift |
38.4 | CCGGCCTTGCACAT---------------------------------ATCATCATCCATGGTGAGCTGCGAGAATAGCCG | 33 bp deleted → no frameshift |
38.0 | CCGGCCTTGCACATGCCGGAGCCGTTGTCGACG----------------------------------------------- | 47 bp deleted → frameshift |
38.0 | CCGGCCTTGCACATGCCGGAGC-----------------------------------------------GAGAATAGCCG | 47 bp deleted → frameshift |
36.6 | CCGGCCTTGCACATGCCGGAGCCGTTGTCGA------------------------------------------ATAGCCG | 42 bp deleted → no frameshift |
36.0 | CCGGCCTTGCACATGCCG-------------------------------------------------------------- | 62 bp deleted → frameshift |
35.5 | CCGGCCTTGCACATGC-----------------------------------------------------GAGAATAGCCG | 53 bp deleted → frameshift |
34.8 | CCGGCCTTGCA-------------------------------------------TCCATGGTGAGCTGCGAGAATAGCCG | 43 bp deleted → frameshift |
34.8 | CCGGCCTTGCACAT-----------------------------------CATCATCCATGGTGAGCTGCGAGAATAGCCG | 35 bp deleted → frameshift |
32.8 | CCGGCCTTGCACATGCCGGAGCCGTTGTCG-------------------------------------------------- | 50 bp deleted → frameshift |
32.8 | CCGGCCTTGCACATGC--------------------------------------------------TGCGAGAATAGCCG | 50 bp deleted → frameshift |
31.2 | CCGGCC---------------------------------------------------ATGGTGAGCTGCGAGAATAGCCG | 51 bp deleted → no frameshift |
29.6 | CCGGCCTTGCACATGCCG----------------------------------------------------AGAATAGCCG | 52 bp deleted → frameshift |
28.5 | CCGGCCTTGCA-----------------------------------------------TGGTGAGCTGCGAGAATAGCCG | 47 bp deleted → frameshift |
27.3 | CCGGCCTTGCACATG------------------------------------------------AGCTGCGAGAATAGCCG | 48 bp deleted → no frameshift |
26.0 | CCGGCCTTGC-----------------------------------------------------------GAGAATAGCCG | 59 bp deleted → frameshift |
25.6 | CC-------------------------------------------------------ATGGTGAGCTGCGAGAATAGCCG | 55 bp deleted → frameshift |
24.4 | CCGGCCTTGC--------------------------------------------------------TGCGAGAATAGCCG | 56 bp deleted → frameshift |
23.4 | CCGGCCTTG---------------------------------------------------GTGAGCTGCGAGAATAGCCG | 51 bp deleted → no frameshift |
23.2 | CCGG---------------------------------------------------------TGAGCTGCGAGAATAGCCG | 57 bp deleted → no frameshift |
21.3 | CCGGCCTTGCACATGCCGGA-----------------------------------------------------ATAGCCG | 53 bp deleted → frameshift |
20.1 | CCGGCCTTG------------------------------------------------------AGCTGCGAGAATAGCCG | 54 bp deleted → no frameshift |
18.8 | CCGGC-------------------------------------------------------------TGCGAGAATAGCCG | 61 bp deleted → frameshift |
16.4 | CCGGC----------------------------------------------------------------GAGAATAGCCG | 64 bp deleted → frameshift |
15.6 | CCGGCC-------------------------------------------------------------------------G | 73 bp deleted → frameshift |
15.0 | CCGGCCT------------------------------------------------------------GCGAGAATAGCCG | 60 bp deleted → no frameshift |
14.0 | CCG-------------------------------------------------------------------AGAATAGCCG | 67 bp deleted → frameshift |
13.2 | CCGGCCTTGC--------------------------------------------------------------------CG | 68 bp deleted → frameshift |
12.6 | CCG----------------------------------------------------------------------------- | 77 bp deleted → frameshift |
9.4 | CCGGCCTTGCACAT-------------------------------------------------------------AGCCG | 61 bp deleted → frameshift |